ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106374257	nuclear transcription factor Y subunit A-10
bna-r.1	125606372	nuclear transcription factor Y subunit A-2-like
bna-r.1	125593863	nuclear transcription factor Y subunit A-2-like
bna-r.1	125606981	nuclear transcription factor Y subunit A-2-like
bra-r.6	103859112	nuclear transcription factor Y subunit A-2
bra-r.6	103849907	nuclear transcription factor Y subunit A-2
bra-r.6	103846990	nuclear transcription factor Y subunit A-10
ath-u.5	NF-YA2	nuclear factor Y, subunit A2
ath-u.5	NF-YA10	nuclear factor Y, subunit A10
ghi-r.1	121203060	nuclear transcription factor Y subunit A-10
ghi-r.1	107934555	nuclear transcription factor Y subunit A-10
cit-r.1	102630159	nuclear transcription factor Y subunit A-10
gma-u.5	NF-YA03	nuclear transcription factor Y subunit A-3
gma-u.5	NF-YA01	nuclear transcription factor Y subunit A-1
gma-u.5	NF-YA1B	putative CCAAT-binding transcription factor GmNF-YA1b
vvi-u.5	100255650	nuclear transcription factor Y subunit A-10
ppo-u.5	7479478	nuclear transcription factor Y subunit A-10
ppo-u.5	7469937	nuclear transcription factor Y subunit A-10
mtr-u.5	25499499	nuclear transcription factor Y subunit A-10
mtr-u.5	11435082	nuclear transcription factor Y subunit A-10
sly-u.5	101265980	nuclear transcription factor Y subunit A-2-like
sly-u.5	101257995	nuclear transcription factor Y subunit A-10
sot-r.1	102599915	nuclear transcription factor Y subunit A-10
sot-r.1	102587642	nuclear transcription factor Y subunit A-10-like
nta-r.1	107808910	nuclear transcription factor Y subunit A-10
nta-r.1	107786257	nuclear transcription factor Y subunit A-2
nta-r.1	107815042	nuclear transcription factor Y subunit A-10
osa-u.5	4333575	nuclear transcription factor Y subunit A-10
osa-u.5	4342440	nuclear transcription factor Y subunit A-5
osa-u.5	4352811	nuclear transcription factor Y subunit A-10
zma-u.5	100193094	Nuclear transcription factor Y subunit A-10
zma-u.5	100283565	nuclear transcription factor Y subunit A-10
zma-u.5	100191652	uncharacterized LOC100191652
tae-r.2	123119274	nuclear transcription factor Y subunit A-2
tae-r.2	123102094	nuclear transcription factor Y subunit A-2
tae-r.2	123104898	nuclear transcription factor Y subunit A-10
hvu-r.1	123452100	nuclear transcription factor Y subunit A-10-like
hvu-r.1	123395532	nuclear transcription factor Y subunit A-10-like
sbi-r.1	8071483	nuclear transcription factor Y subunit A-10
sbi-r.1	8062205	nuclear transcription factor Y subunit A-10
bdi-r.1	100833622	nuclear transcription factor Y subunit A-2
bdi-r.1	100827854	nuclear transcription factor Y subunit A-10

Top 50 coexpressed genes to 106374257 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106374257 (bna-r.1 coexpression data)

CoexMap"106374257"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(1371 genes)

IEA

GO CC

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(792 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(968 genes)	IEA

Protein

XP_048623181.1 [sequence] [blastp]
XP_048623182.1 [sequence] [blastp]
XP_048623183.1 [sequence] [blastp]
XP_048623184.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_048623181.1)
nucl 9	(predict for XP_048623182.1)
nucl 9	(predict for XP_048623183.1)
nucl 9	(predict for XP_048623184.1)

Subcellular
localization
TargetP

other 6, chlo 3	(predict for XP_048623181.1)
other 6, chlo 3	(predict for XP_048623182.1)
other 6, chlo 3	(predict for XP_048623183.1)
other 6, chlo 3	(predict for XP_048623184.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106374257	bna-r.1 for 125606372	bna-r.1 for 125593863	bna-r.1 for 125606981	bra-r.6 for 103859112	bra-r.6 for 103849907	bra-r.6 for 103846990	ath-u.5 for NF-YA2	ath-u.5 for NF-YA10	ghi-r.1 for 121203060	ghi-r.1 for 107934555	cit-r.1 for 102630159	gma-u.5 for NF-YA03	gma-u.5 for NF-YA01	gma-u.5 for NF-YA1B	vvi-u.5 for 100255650	ppo-u.5 for 7479478	ppo-u.5 for 7469937	mtr-u.5 for 25499499	mtr-u.5 for 11435082	sly-u.5 for 101265980	sly-u.5 for 101257995	sot-r.1 for 102599915	sot-r.1 for 102587642	nta-r.1 for 107808910	nta-r.1 for 107786257	nta-r.1 for 107815042	osa-u.5 for 4333575	osa-u.5 for 4342440	osa-u.5 for 4352811	zma-u.5 for 100193094	zma-u.5 for 100283565	zma-u.5 for 100191652	tae-r.2 for 123119274	tae-r.2 for 123102094	tae-r.2 for 123104898	hvu-r.1 for 123452100	hvu-r.1 for 123395532	sbi-r.1 for 8071483	sbi-r.1 for 8062205	bdi-r.1 for 100833622	bdi-r.1 for 100827854

Ortholog

Ortholog ID: 2807

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

NF-YA2

NF-YA10

LOC107928144

LOC107925528

LOC102630159

NF-YA03

NF-YA01

NF-YA1B

Function^*

nuclear transcription factor Y subunit A-2-like

nuclear transcription factor Y subunit A-2