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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106374391   DNA-directed RNA polymerase I subunit RPA12 
 ath-u.5   AT3G25940   TFIIB zinc-binding protein 
 gma-u.5   100527489   uncharacterized LOC100527489 
 vvi-u.5   100853901   DNA-directed RNA polymerase I subunit RPA12 
 ppo-u.5   7481723   uncharacterized LOC7481723 
 mtr-u.5   112420268   DNA-directed RNA polymerase I subunit RPA12 
 mtr-u.5   120577857   DNA-directed RNA polymerase I subunit RPA12 
 mtr-u.5   120577861   DNA-directed RNA polymerase I subunit RPA12 
 sly-u.5   101268675   uncharacterized LOC101268675 
 osa-u.5   4333888   uncharacterized LOC4333888 

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Top 50 coexpressed genes to 106374391 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106374391 (bna-r.1 coexpression data)

CoexMap"106374391"


bnaLOC106374391 | Entrez gene ID : 106374391    
Species bna ath gma vvi ppo mtr sly osa hvu zma cit bra ghi sbi bdi nta tae cre sot
Paralog 1 1 1 1 1 3 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
GO BP
GO:0006363 [list] [network] termination of RNA polymerase I transcription  (4 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (52 genes)  IEA  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (117 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (3493 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (12766 genes)  IEA  
Protein XP_013669886.1 [sequence] [blastp]
XP_013669887.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  extr 3,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_013669886.1)
chlo 4,  extr 3,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_013669887.1)
Subcellular
localization
TargetP
scret 8  (predict for XP_013669886.1)
scret 8  (predict for XP_013669887.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106374391
ath-u.5
for
AT3G25940
gma-u.5
for
100527489
vvi-u.5
for
100853901
ppo-u.5
for
7481723
mtr-u.5
for
112420268
mtr-u.5
for
120577857
mtr-u.5
for
120577861
sly-u.5
for
101268675
osa-u.5
for
4333888


Ortholog ID: 5762
Species bra ath ghi ghi cit gma vvi ppo mtr mtr sly sot nta nta osa tae tae hvu sbi bdi cre
Symbol LOC103872808 AT3G25940 LOC107938112 LOC107940714 LOC102611182 LOC100527489 LOC100853901 LOC7481723 LOC11424547 LOC120577857 LOC101268675 LOC102582939 LOC107816681 LOC107769073 LOC4333888 LOC123087107 LOC123095863 LOC123447452 LOC8063391 LOC100824554 CHLRE_01g018000v5
Function* DNA-directed RNA polymerase I subunit RPA12 TFIIB zinc-binding protein DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 uncharacterized LOC102611182 uncharacterized LOC100527489 DNA-directed RNA polymerase I subunit RPA12 uncharacterized LOC7481723 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 uncharacterized LOC101268675 DNA-directed RNA polymerase I subunit RPA12-like uncharacterized LOC107816681 uncharacterized LOC107769073 uncharacterized LOC4333888 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12-like DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
bra03040 Spliceosome 4
bra03018 RNA degradation 3
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 3
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
hvu03018 RNA degradation 4
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103872808 822191 107938112 107940714 102611182 100527489 100853901 7481723 11424547 120577857 101268675 102582939 107816681 107769073 4333888 123087107 123095863 123447452 8063391 100824554 5715151
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