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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106381457   DNA repair protein recA homolog 1, chloroplastic-like 
 ath-u.5   RECA1   recA DNA recombination family protein 
 gma-u.5   100788534   DNA repair protein recA homolog 1, chloroplastic 
 vvi-u.5   100249133   DNA repair protein recA homolog 1, chloroplastic 
 ppo-u.5   18095763   DNA repair protein recA homolog 1, chloroplastic 
 mtr-u.5   25502471   DNA repair protein recA homolog 1, chloroplastic 
 sly-u.5   101261637   DNA repair protein recA homolog 1, chloroplastic 
 osa-u.5   4333537   DNA repair protein recA homolog 1, chloroplastic 
 zma-u.5   100282426   protein recA 

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Top 50 coexpressed genes to 106381457 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106381457 (bna-r.1 coexpression data)

CoexMap"106381457"


bnaLOC106381457 | Entrez gene ID : 106381457    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03440 [list] [network] Homologous recombination (136 genes)
GO BP
GO:0006281 [list] [network] DNA repair  (1192 genes)  IEA  
GO CC
GO MF
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (59 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (274 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (1360 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5995 genes)  IEA  
Protein XP_048603385.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 6  (predict for XP_048603385.1)
Subcellular
localization
TargetP
chlo 2  (predict for XP_048603385.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106381457
ath-u.5
for
RECA1
gma-u.5
for
100788534
vvi-u.5
for
100249133
ppo-u.5
for
18095763
mtr-u.5
for
25502471
sly-u.5
for
101261637
osa-u.5
for
4333537
zma-u.5
for
100282426


Ortholog ID: 8316
Species bna bna bra bra ath ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC106353418 LOC106381457 LOC103853162 LOC103830499 RECA1 LOC121203737 LOC121213739 LOC102626696 LOC100788534 LOC100249133 LOC18095763 LOC25502471 LOC101261637 LOC102585921 LOC107816977 LOC107810192 LOC4333537 LOC100282426 LOC123113227 LOC123122736 LOC123452124 LOC8062225 LOC100841100 CHLRE_07g314650v5
Function* DNA repair protein recA homolog 1, chloroplastic-like DNA repair protein recA homolog 1, chloroplastic-like DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic recA DNA recombination family protein DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic protein recA DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
ppo00230 Purine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 9
osa00300 Lysine biosynthesis 5
osa00261 Monobactam biosynthesis 2
osa00470 D-Amino acid metabolism 2
osa01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
tae03440 Homologous recombination 3
tae00010 Glycolysis / Gluconeogenesis 3
tae00620 Pyruvate metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu01210 2-Oxocarboxylic acid metabolism 2
hvu04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00061 Fatty acid biosynthesis 2
sbi00780 Biotin metabolism 2
sbi01212 Fatty acid metabolism 2
sbi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106353418 106381457 103853162 103830499 844246 121203737 121213739 102626696 100788534 100249133 18095763 25502471 101261637 102585921 107816977 107810192 4333537 100282426 123113227 123122736 123452124 8062225 100841100 5726340
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