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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106387632   cleavage stimulation factor subunit 77-like 
 ath-u.5   CSTF77   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100799377   cleavage stimulation factor subunit 77 
 vvi-u.5   100262033   cleavage stimulation factor subunit 77 
 ppo-u.5   7465490   cleavage stimulation factor subunit 77 
 mtr-u.5   11408840   cleavage stimulation factor subunit 77 
 sly-u.5   101249869   cleavage stimulation factor subunit 77 
 osa-u.5   4352587   cleavage stimulation factor subunit 77 
 zma-u.5   100278777   uncharacterized LOC100278777 

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Top 50 coexpressed genes to 106387632 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106387632 (bna-r.1 coexpression data)

CoexMap"106387632"


bnaLOC106387632 | Entrez gene ID : 106387632    
Species bna ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi nta sot
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03015 [list] [network] mRNA surveillance pathway (420 genes)
GO BP
GO:0031124 [list] [network] mRNA 3'-end processing  (33 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_013682986.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  chlo 1  (predict for XP_013682986.2)
Subcellular
localization
TargetP
other 8  (predict for XP_013682986.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106387632

.
ath-u.5
for
CSTF77

.
gma-u.5
for
100799377

.
vvi-u.5
for
100262033

.
ppo-u.5
for
7465490

.
mtr-u.5
for
11408840

.
sly-u.5
for
101249869

.
osa-u.5
for
4352587

.
zma-u.5
for
100278777

.


Ortholog ID: 10461
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol CSTF77 LOC100799377 LOC101249869 LOC4352587 LOC100278777 LOC103835942 LOC100262033 LOC7465490 LOC11408840 LOC123077153 LOC123060144 LOC123442691 LOC107942974 LOC107903363 LOC106389262 LOC106387632 CHLRE_12g506050v5 LOC8066574 LOC102602868 LOC102629682 LOC100838953 LOC107827044 LOC107798403
Function* Tetratricopeptide repeat (TPR)-like superfamily protein cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 uncharacterized LOC100278777 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77-like uncharacterized protein cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77 cleavage stimulation factor subunit 77
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 3
ath03015 mRNA surveillance pathway 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma04144 Endocytosis 2
gma04517 IgSF CAM signaling 2
gma05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 3
sly04144 Endocytosis 3
sly05100 Bacterial invasion of epithelial cells 3
sly03040 Spliceosome 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo03013 Nucleocytoplasmic transport 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
hvu03015 mRNA surveillance pathway 3
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03040 Spliceosome 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 5
nta03015 mRNA surveillance pathway 2
nta00450 Selenocompound metabolism 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03018 RNA degradation 2
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
nta00380 Tryptophan metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838354 100799377 101249869 4352587 100278777 103835942 100262033 7465490 11408840 123077153 123060144 123442691 107942974 107903363 106389262 106387632 5716476 8066574 102602868 102629682 100838953 107827044 107798403
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