ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	cPT4	Undecaprenyl pyrophosphate synthetase family protein
ath-u.5	AT5G58784	Undecaprenyl pyrophosphate synthetase family protein
gma-u.5	100815256	dehydrodolichyl diphosphate synthase 2
gma-u.5	100801810	dehydrodolichyl diphosphate synthase 2
gma-u.5	100789922	dehydrodolichyl diphosphate synthase 2
vvi-u.5	100244987	cis-prenyltransferase 4, chloroplastic
ppo-u.5	7468564	dehydrodolichyl diphosphate synthase 2
mtr-u.5	11410618	dehydrodolichyl diphosphate synthase 2
sly-u.5	CPT4	cis-prenyltransferase 4
sly-u.5	101249721	dehydrodolichyl diphosphate synthase CPT5, chloroplastic
sly-u.5	CPT7	dehydrodolichyl diphosphate synthase 2
osa-u.5	4324755	cis-prenyltransferase 4, chloroplastic
zma-u.5	100285459	undecaprenyl pyrophosphate synthetase
zma-u.5	100284572	undecaprenyl pyrophosphate synthetase
zma-u.5	100283522	undecaprenyl pyrophosphate synthetase

Annotation

functional annotation

KEGG

bna00900 [list] [network] Terpenoid backbone biosynthesis (170 genes)

GO BP

GO:0016094 [list] [network] polyprenol biosynthetic process	(25 genes)	IEA
GO:0009668 [list] [network] plastid membrane organization	(57 genes)	IEA
GO:0009409 [list] [network] response to cold	(59 genes)	IEA

GO CC

GO:0009570 [list] [network] chloroplast stroma

(365 genes)

IEA

GO MF

Protein

XP_013683455.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 1, cyto 1, cyto_nucl 1

(predict for XP_013683455.2)

Subcellular
localization
TargetP

scret 8

(predict for XP_013683455.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for cPT4	ath-u.5 for AT5G58784	gma-u.5 for 100815256	gma-u.5 for 100801810	gma-u.5 for 100789922	vvi-u.5 for 100244987	ppo-u.5 for 7468564	mtr-u.5 for 11410618	sly-u.5 for CPT4	sly-u.5 for 101249721	sly-u.5 for CPT7	osa-u.5 for 4324755	zma-u.5 for 100285459	zma-u.5 for 100284572	zma-u.5 for 100283522

Ortholog

Ortholog ID: 1680

Species

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

hvu

sbi

bdi

cre

Symbol

cPT4

CPT7

Function^*

dehydrodolichyl diphosphate synthase 5-like

Undecaprenyl pyrophosphate synthetase family protein

cis-prenyltransferase 4, chloroplastic

cis-prenyltransferase 4, chloroplastic-like

dehydrodolichyl diphosphate synthase 2

cis-prenyltransferase 4, chloroplastic

dehydrodolichyl diphosphate synthase 2

dehydrodolichyl diphosphate synthase CPT5, chloroplastic

dimethylallylcistransferase, chloroplastic-like

dehydrodolichyl diphosphate synthase 2-like

cis-prenyltransferase 4, chloroplastic-like

cis-prenyltransferase 4, chloroplastic

undecaprenyl pyrophosphate synthetase

cis-prenyltransferase 4, chloroplastic-like

isoprenyl transferase

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00900	Terpenoid backbone biosynthesis	3
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00592	alpha-Linolenic acid metabolism	4
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00710	Carbon fixation by Calvin cycle	5
mtr01200	Carbon metabolism	5
mtr00010	Glycolysis / Gluconeogenesis	4
mtr00030	Pentose phosphate pathway	4
mtr00051	Fructose and mannose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04146	Peroxisome	3
sly00073	Cutin, suberine and wax biosynthesis	2
sly00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00350	Tyrosine metabolism	2
sly01240	Biosynthesis of cofactors	2
sly00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00910	Nitrogen metabolism	2
hvu01310	Nitrogen cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2
sbi00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

111212069

835991

835994

107890967

107889771

102628547

100801810

100815256

100244987

7468564

11410618

101256886

101249721

102597403

102581796

107805010

4324755

100285459

100283522

123447616

123444854

8058935

100830201

5725180

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to cPT4 (ath-u.5 coexpression data)

Top 50 enrichment test to cPT4 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	2	3	1	1	1	3	1	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to cPT4 (ath-u.5 coexpression data)

Top 50 enrichment test to cPT4 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**