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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106388993   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 ath-u.5   AT3G07860   Ubiquitin-like superfamily protein 
 gma-u.5   100815924   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 vvi-u.5   109121397   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 mtr-u.5   11446596   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 sly-u.5   101252038   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 osa-u.5   4337305   U11/U12 small nuclear ribonucleoprotein 25 kDa protein 
 zma-u.5   100381558   uncharacterized LOC100381558 

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Top 50 coexpressed genes to 106388993 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106388993 (bna-r.1 coexpression data)

CoexMap"106388993"


bnaLOC106388993 | Entrez gene ID : 106388993    
Species bna ath gma vvi mtr sly osa zma hvu cit bra ghi ppo sbi bdi nta tae cre sot
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005689 [list] [network] U12-type spliceosomal complex  (61 genes)  IEA  
GO MF
Protein XP_013684626.2 [sequence] [blastp]
XP_013684627.2 [sequence] [blastp]
XP_013684629.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto_nucl 4,  mito 2,  cyto 1,  chlo 1,  extr 1  (predict for XP_013684626.2)
nucl 4,  cyto_nucl 4,  mito 2,  cyto 1,  chlo 1,  extr 1  (predict for XP_013684627.2)
nucl 4,  cyto_nucl 4,  mito 2,  cyto 1,  chlo 1,  extr 1  (predict for XP_013684629.2)
Subcellular
localization
TargetP
other 9  (predict for XP_013684626.2)
other 9  (predict for XP_013684627.2)
other 9  (predict for XP_013684629.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106388993
ath-u.5
for
AT3G07860
gma-u.5
for
100815924
vvi-u.5
for
109121397
mtr-u.5
for
11446596
sly-u.5
for
101252038
osa-u.5
for
4337305
zma-u.5
for
100381558


Ortholog ID: 6862
Species bna bna bra ath ghi ghi cit gma vvi mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC106388993 LOC111204509 LOC103859246 AT3G07860 LOC107904002 LOC107932477 LOC102625053 LOC100815924 LOC109121397 LOC11446596 LOC101252038 LOC102602180 LOC107760538 LOC107817456 LOC4337305 LOC100381558 LOC123046961 LOC123190632 LOC123428014 LOC8082553 LOC100829657
Function* U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein Ubiquitin-like superfamily protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein uncharacterized LOC100381558 U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like U11/U12 small nuclear ribonucleoprotein 25 kDa protein U11/U12 small nuclear ribonucleoprotein 25 kDa protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03008 Ribosome biogenesis in eukaryotes 5
bna00340 Histidine metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 10
bna03008 Ribosome biogenesis in eukaryotes 8
bna00340 Histidine metabolism 4
bna01230 Biosynthesis of amino acids 4
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 3
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03083 Polycomb repressive complex 3
tae04712 Circadian rhythm - plant 3
tae00310 Lysine degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106388993 111204509 103859246 819977 107904002 107932477 102625053 100815924 109121397 11446596 101252038 102602180 107760538 107817456 4337305 100381558 123046961 123190632 123428014 8082553 100829657
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