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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106389164   HMG-Y-related protein A-like 
 ath-u.5   HMGA   high mobility group A 
 gma-u.5   100803968   HMG-Y-related protein A 
 gma-u.5   100793697   HMG-Y-related protein A 
 gma-u.5   100802642   HMG-Y-related protein B 
 vvi-u.5   100244042   HMG-Y-related protein A 
 ppo-u.5   7459767   HMG-Y-related protein B 
 ppo-u.5   7487391   HMG-Y-related protein A 
 ppo-u.5   7482897   HMG-Y-related protein B 
 mtr-u.5   11410322   HMG-Y-related protein B 
 mtr-u.5   11426698   HMG-Y-related protein A 
 sly-u.5   101268754   HMG-Y-related protein A 
 sly-u.5   101257130   HMG-Y-related protein A 
 sly-u.5   101260139   HMG-Y-related protein B 
 osa-u.5   4347003   HMG-Y-related protein A 
 osa-u.5   4345627   HMG-Y-related protein A 
 zma-u.5   541871   high mobility group I/Y-2 
 zma-u.5   100277576   uncharacterized LOC100277576 

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Top 50 coexpressed genes to 106389164 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106389164 (bna-r.1 coexpression data)

CoexMap"106389164"


bnaLOC106389164 | Entrez gene ID : 106389164    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 1 3 1 3 2 3 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045910 [list] [network] negative regulation of DNA recombination  (43 genes)  IEA  
GO:0030261 [list] [network] chromosome condensation  (54 genes)  IEA  
GO:0006334 [list] [network] nucleosome assembly  (137 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (5322 genes)  IEA  
GO CC
GO:0000786 [list] [network] nucleosome  (197 genes)  IEA  
GO:0000785 [list] [network] chromatin  (564 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (615 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0031492 [list] [network] nucleosomal DNA binding  (34 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (1590 genes)  IEA  
Protein NP_001303023.1 [sequence] [blastp]
XP_048637288.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001303023.1)
nucl 10  (predict for XP_048637288.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001303023.1)
other 7  (predict for XP_048637288.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106389164
ath-u.5
for
HMGA
gma-u.5
for
100803968
gma-u.5
for
100793697
gma-u.5
for
100802642
vvi-u.5
for
100244042
ppo-u.5
for
7459767
ppo-u.5
for
7487391
ppo-u.5
for
7482897
mtr-u.5
for
11410322
mtr-u.5
for
11426698
sly-u.5
for
101268754
sly-u.5
for
101257130
sly-u.5
for
101260139
osa-u.5
for
4347003
osa-u.5
for
4345627
zma-u.5
for
541871
zma-u.5
for
100277576


Ortholog ID: 2855
Species bna bna bra bra ath ghi ghi cit cit gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu sbi bdi bdi
Symbol LOC106447960 LOC106389164 LOC103827568 LOC103854054 HMGA LOC107901969 LOC107934494 LOC102619719 LOC102619266 LOC100804682 LOC100802642 LOC100244042 LOC7482897 LOC18106641 LOC11426698 LOC11410322 LOC101268754 LOC101260139 LOC102597480 LOC102582893 LOC107778578 LOC107783486 LOC4345627 LOC4347003 LOC100277576 LOC541871 LOC123105044 LOC123113340 LOC123452257 LOC8075642 LOC100822567 LOC100846746
Function* HMG-Y-related protein A HMG-Y-related protein A-like HMG-Y-related protein A HMG-Y-related protein A high mobility group A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein B-like HMG-Y-related protein B-like HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein B-like HMG-Y-related protein A-like HMG-Y-related protein A-like HMG-Y-related protein A-like HMG-Y-related protein A HMG-Y-related protein A uncharacterized LOC100277576 high mobility group I/Y-2 HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A-like HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00220 Arginine biosynthesis 4
bra00250 Alanine, aspartate and glutamate metabolism 4
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 4
ath04517 IgSF CAM signaling 4
ath04814 Motor proteins 4
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 4
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 4
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 3
nta01232 Nucleotide metabolism 3
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
osa04141 Protein processing in endoplasmic reticulum 2
osa04145 Phagosome 2
osa03010 Ribosome 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106447960 106389164 103827568 103854054 838055 107901969 107934494 102619719 102619266 100804682 100802642 100244042 7482897 18106641 11426698 11410322 101268754 101260139 102597480 102582893 107778578 107783486 4345627 4347003 100277576 541871 123105044 123113340 123452257 8075642 100822567 100846746
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