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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106389405   nuclear cap-binding protein subunit 1 
 bna-r.1   106439757   nuclear cap-binding protein subunit 1-like 
 bra-r.6   103860374   nuclear cap-binding protein subunit 1 
 ath-u.5   ABH1   ARM repeat superfamily protein 
 ghi-r.1   107945163   nuclear cap-binding protein subunit 1 
 ghi-r.1   107939466   nuclear cap-binding protein subunit 1 
 cit-r.1   102628799   nuclear cap-binding protein subunit 1 
 gma-u.5   100811738   nuclear cap-binding protein subunit 1 
 gma-u.5   100791079   nuclear cap-binding protein subunit 1 
 vvi-u.5   100265341   nuclear cap-binding protein subunit 1 
 ppo-u.5   7482342   nuclear cap-binding protein subunit 1 
 mtr-u.5   11429115   nuclear cap-binding protein subunit 1 
 sly-u.5   101249122   nuclear cap-binding protein subunit 1 
 sot-r.1   102588913   nuclear cap-binding protein subunit 1 
 nta-r.1   107827611   nuclear cap-binding protein subunit 1 
 nta-r.1   107807683   nuclear cap-binding protein subunit 1 
 osa-u.5   4332822   nuclear cap-binding protein subunit 1-like 
 zma-u.5   100384700   nuclear cap-binding protein subunit 1 
 tae-r.2   123097487   nuclear cap-binding protein subunit 1 
 tae-r.2   123092050   nuclear cap-binding protein subunit 1 
 tae-r.2   123135686   nuclear cap-binding protein subunit 1 
 hvu-r.1   123448673   nuclear cap-binding protein subunit 1 
 sbi-r.1   8082662   nuclear cap-binding protein subunit 1 
 bdi-r.1   100839026   nuclear cap-binding protein subunit 1 
 cre-r.1   CHLRE_12g524100v5   uncharacterized protein 

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Top 50 coexpressed genes to 106389405 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106389405 (bna-r.1 coexpression data)

CoexMap"106389405"


bnaLOC106389405 | Entrez gene ID : 106389405    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03013 [list] [network] Nucleocytoplasmic transport (328 genes)
bna03015 [list] [network] mRNA surveillance pathway (420 genes)
bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (41 genes)  IEA  
GO:0006406 [list] [network] mRNA export from nucleus  (92 genes)  IEA  
GO CC
GO:0005846 [list] [network] nuclear cap binding complex  (4 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0000339 [list] [network] RNA cap binding  (39 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_013685095.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  chlo 1,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_013685095.1)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for XP_013685095.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106389405
bna-r.1
for
106439757
bra-r.6
for
103860374
ath-u.5
for
ABH1
ghi-r.1
for
107945163
ghi-r.1
for
107939466
cit-r.1
for
102628799
gma-u.5
for
100811738
gma-u.5
for
100791079
vvi-u.5
for
100265341
ppo-u.5
for
7482342
mtr-u.5
for
11429115
sly-u.5
for
101249122
sot-r.1
for
102588913
nta-r.1
for
107827611
nta-r.1
for
107807683
osa-u.5
for
4332822
zma-u.5
for
100384700
tae-r.2
for
123097487
tae-r.2
for
123092050
tae-r.2
for
123135686
hvu-r.1
for
123448673
sbi-r.1
for
8082662
bdi-r.1
for
100839026
cre-r.1
for
CHLRE_12g524100v5


Ortholog ID: 8870
Species bna bna bra ath ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106389405 LOC106439757 LOC103860374 ABH1 LOC107945163 LOC107939466 LOC102628799 LOC100811738 LOC100791079 LOC100265341 LOC7482342 LOC11429115 LOC101249122 LOC102588913 LOC107827611 LOC107807683 LOC4332822 LOC100384700 LOC123097487 LOC123092050 LOC123085833 LOC123448673 LOC8082662 LOC100839026 CHLRE_12g524100v5
Function* nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1-like nuclear cap-binding protein subunit 1 ARM repeat superfamily protein nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1-like nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 nuclear cap-binding protein subunit 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna04120 Ubiquitin mediated proteolysis 3
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna04120 Ubiquitin mediated proteolysis 3
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath00970 Aminoacyl-tRNA biosynthesis 4
ath03013 Nucleocytoplasmic transport 3
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi04626 Plant-pathogen interaction 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi04626 Plant-pathogen interaction 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03013 Nucleocytoplasmic transport 3
cit00970 Aminoacyl-tRNA biosynthesis 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 4
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 3
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr00970 Aminoacyl-tRNA biosynthesis 2
mtr03020 RNA polymerase 2
mtr03040 Spliceosome 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03013 Nucleocytoplasmic transport 4
sly03018 RNA degradation 2
sly03020 RNA polymerase 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 6
sot03015 mRNA surveillance pathway 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa00970 Aminoacyl-tRNA biosynthesis 5
osa03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 6
zma03040 Spliceosome 2
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 7
tae03013 Nucleocytoplasmic transport 4
tae03040 Spliceosome 4
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae03013 Nucleocytoplasmic transport 4
tae03040 Spliceosome 4
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03015 mRNA surveillance pathway 4
tae03040 Spliceosome 4
tae00053 Ascorbate and aldarate metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 6
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 6
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 3
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106389405 106439757 103860374 815840 107945163 107939466 102628799 100811738 100791079 100265341 7482342 11429115 101249122 102588913 107827611 107807683 4332822 100384700 123097487 123092050 123085833 123448673 8082662 100839026 5722525
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