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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106390672   YTH domain-containing protein 1 
 bna-r.1   106380571   YTH domain-containing protein 1 
 bna-r.1   125586911   YTH domain-containing protein 1-like 
 bra-r.6   103853498   YTH domain-containing protein 1 
 ath-u.5   AT4G11970   YTH family protein 
 ghi-r.1   107930042   YTH domain-containing protein 1 
 ghi-r.1   107926972   YTH domain-containing protein 1 
 cit-r.1   102622363   uncharacterized LOC102622363 
 gma-u.5   100784130   30-kDa cleavage and polyadenylation specificity factor 30 
 gma-u.5   100799369   30-kDa cleavage and polyadenylation specificity factor 30 
 vvi-u.5   100254803   uncharacterized LOC100254803 
 ppo-u.5   7490930   uncharacterized LOC7490930 
 sly-u.5   101247445   uncharacterized LOC101247445 
 sly-u.5   101247143   uncharacterized LOC101247143 
 sly-u.5   101246845   YTH domain-containing protein ECT3-like 
 sot-r.1   102583780   uncharacterized LOC102583780 
 sot-r.1   102582785   uncharacterized LOC102582785 
 nta-r.1   107796409   uncharacterized LOC107796409 
 nta-r.1   107805037   uncharacterized LOC107805037 
 cre-r.1   CHLRE_12g516400v5   uncharacterized protein 

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Top 50 coexpressed genes to 106390672 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106390672 (bna-r.1 coexpression data)

CoexMap"106390672"


bnaLOC106390672 | Entrez gene ID : 106390672    
Species bna bra ath ghi cit gma vvi ppo sly sot nta cre bdi osa tae zma mtr sbi hvu
Paralog 3 1 1 2 1 2 1 1 3 2 2 1 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048024 [list] [network] regulation of mRNA splicing, via spliceosome  (76 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005654 [list] [network] nucleoplasm  (630 genes)  IEA  
GO MF
GO:1990247 [list] [network] N6-methyladenosine-containing RNA reader activity  (5 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
Protein XP_013686645.1 [sequence] [blastp]
XP_013686646.1 [sequence] [blastp]
XP_013686647.1 [sequence] [blastp]
XP_022559460.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 2,  chlo 1,  cyto_E.R. 1  (predict for XP_013686645.1)
nucl 4,  cyto 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_013686646.1)
chlo 3,  extr 1,  E.R. 1,  nucl 1,  cysk_nucl 1,  E.R._vacu 1,  E.R._plas 1,  cyto_E.R. 1  (predict for XP_013686647.1)
nucl 7,  cyto_nucl 4,  cyto 1  (predict for XP_022559460.1)
Subcellular
localization
TargetP
other 9  (predict for XP_013686645.1)
other 9  (predict for XP_013686646.1)
other 9  (predict for XP_013686647.1)
other 9  (predict for XP_022559460.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106390672
bna-r.1
for
106380571
bna-r.1
for
125586911
bra-r.6
for
103853498
ath-u.5
for
AT4G11970
ghi-r.1
for
107930042
ghi-r.1
for
107926972
cit-r.1
for
102622363
gma-u.5
for
100784130
gma-u.5
for
100799369
vvi-u.5
for
100254803
ppo-u.5
for
7490930
sly-u.5
for
101247445
sly-u.5
for
101247143
sly-u.5
for
101246845
sot-r.1
for
102583780
sot-r.1
for
102582785
nta-r.1
for
107796409
nta-r.1
for
107805037
cre-r.1
for
CHLRE_12g516400v5


Ortholog ID: 12212
Species bna bna bna bra ath ghi ghi cit gma gma vvi ppo sly sly sly sot sot nta nta cre
Symbol LOC106390672 LOC106380571 LOC125586911 LOC103853498 AT4G11970 LOC107930042 LOC107926972 LOC102622363 LOC100784130 LOC100799369 LOC100254803 LOC7490930 LOC101247445 LOC101247143 LOC101246845 LOC102583780 LOC102582785 LOC107796409 LOC107805037 CHLRE_12g516400v5
Function* YTH domain-containing protein 1 YTH domain-containing protein 1 YTH domain-containing protein 1-like YTH domain-containing protein 1 YTH family protein YTH domain-containing protein 1 YTH domain-containing protein 1 uncharacterized LOC102622363 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 uncharacterized LOC100254803 uncharacterized LOC7490930 uncharacterized LOC101247445 uncharacterized LOC101247143 YTH domain-containing protein ECT3-like uncharacterized LOC102583780 uncharacterized LOC102582785 uncharacterized LOC107796409 uncharacterized LOC107805037 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 2
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106390672 106380571 125586911 103853498 826804 107930042 107926972 102622363 100784130 100799369 100254803 7490930 101247445 101247143 101246845 102583780 102582785 107796409 107805037 66055562
The preparation time of this page was 4.1 [sec].