ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106391499	RNA polymerase sigma factor sigF, chloroplastic
ath-u.5	SIGF	RNApolymerase sigma-subunit F
gma-u.5	100815699	RNA polymerase sigma factor sigF, chloroplastic
gma-u.5	100793539	RNA polymerase sigma factor sigF, chloroplastic
gma-u.5	100782822	RNA polymerase sigma factor sigF, chloroplastic
vvi-u.5	100267110	RNA polymerase sigma factor sigF, chloroplastic
ppo-u.5	18100169	RNA polymerase sigma factor sigF, chloroplastic
mtr-u.5	11434136	RNA polymerase sigma factor sigF, chloroplastic
mtr-u.5	11432370	RNA polymerase sigma factor sigF, chloroplastic
sly-u.5	101267154	RNA polymerase sigma factor sigF, chloroplastic
osa-u.5	4345044	RNA polymerase sigma factor sigF, chloroplastic
zma-u.5	542484	sigma-like factor 6

functional annotation

KEGG

GO BP

GO:0006352 [list] [network] DNA-templated transcription initiation	(224 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(5322 genes)	IEA

GO CC

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity

(3791 genes)

IEA

Protein

XP_013687619.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 4

(predict for XP_013687619.2)

Subcellular
localization
TargetP

chlo 9

(predict for XP_013687619.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106391499	ath-u.5 for SIGF	gma-u.5 for 100815699	gma-u.5 for 100793539	gma-u.5 for 100782822	vvi-u.5 for 100267110	ppo-u.5 for 18100169	mtr-u.5 for 11434136	mtr-u.5 for 11432370	sly-u.5 for 101267154	osa-u.5 for 4345044	zma-u.5 for 542484

Ortholog ID: 7177

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SIGF

Function^*

RNA polymerase sigma factor sigF, chloroplastic-like

RNA polymerase sigma factor sigF, chloroplastic

RNApolymerase sigma-subunit F

RNA polymerase sigma factor sigF, chloroplastic

sigma-like factor 6

RNA polymerase sigma factor sigF, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2
bna04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00970	Aminoacyl-tRNA biosynthesis	2
bna00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	2
bra00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	7
ghi00860	Porphyrin metabolism	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	8
ghi00860	Porphyrin metabolism	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00561	Glycerolipid metabolism	2
gma00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	3
vvi00860	Porphyrin metabolism	2
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	8
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00460	Cyanoamino acid metabolism	2
mtr00500	Starch and sucrose metabolism	2
mtr00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	3
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	7
zma00196	Photosynthesis - antenna proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	3
tae00710	Carbon fixation by Calvin cycle	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	5
tae00010	Glycolysis / Gluconeogenesis	3
tae00030	Pentose phosphate pathway	3
tae00051	Fructose and mannose metabolism	3
tae00710	Carbon fixation by Calvin cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00010	Glycolysis / Gluconeogenesis	2
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00900	Terpenoid backbone biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

125584278

106391499

103865571

818273

107899472

107948374

102608402

100815699

100306289

100267110

18100169

11434136

11432370

101267154

102599838

107807763

107790542

4345044

542484

123087460

123123907

123395233

110431995

100832494

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106391499 (bna-r.1 coexpression data)

Top 50 enrichment test to 106391499 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	1	3	1	1	2	1	1	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106391499 (bna-r.1 coexpression data)

Top 50 enrichment test to 106391499 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**