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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106445468   DNA-directed RNA polymerase V subunit 5C 
 bna-r.1   106368028   DNA-directed RNA polymerase V subunit 5A 
 bna-r.1   106431374   DNA-directed RNA polymerase V subunit 5C-like 
 bra-r.6   103841615   DNA-directed RNA polymerase V subunit 5A 
 ath-u.5   RPB5D   RNA polymerase II fifth largest subunit, D 
 ath-u.5   NRPE5   Eukaryotic rpb5 RNA polymerase subunit family protein 
 ghi-r.1   107891355   DNA-directed RNA polymerase V subunit 5A 
 ghi-r.1   107889380   DNA-directed RNA polymerase V subunit 5A 
 cit-r.1   102611161   DNA-directed RNA polymerase V subunit 5A 
 cit-r.1   102612864   DNA-directed RNA polymerase V subunit 5C 
 gma-u.5   100306033   DNA-directed RNA polymerase II subunit family protein 
 vvi-u.5   100258335   DNA-directed RNA polymerase V subunit 5C 
 vvi-u.5   100853213   DNA-directed RNA polymerase V subunit 5A 
 ppo-u.5   7458931   DNA-directed RNA polymerase V subunit 5A 
 mtr-u.5   11419143   DNA-directed RNA polymerase V subunit 5A 
 mtr-u.5   120579378   DNA-directed RNA polymerases IV and V subunit 5B 
 mtr-u.5   25489110   DNA-directed RNA polymerase V subunit 5A 
 sly-u.5   101255881   DNA-directed RNA polymerase V subunit 5A 
 sly-u.5   101252227   DNA-directed RNA polymerase V subunit 5A-like 
 sot-r.1   102585816   DNA-directed RNA polymerase V subunit 5A-like 
 sot-r.1   102596627   DNA-directed RNA polymerase V subunit 5A 
 nta-r.1   107804980   DNA-directed RNA polymerase V subunit 5A-like 
 nta-r.1   107775202   DNA-directed RNA polymerase V subunit 5A 
 osa-u.5   4351463   DNA-directed RNA polymerase V subunit 5A 
 osa-u.5   4349748   DNA-directed RNA polymerase V subunit 5A 
 zma-u.5   100273995   uncharacterized LOC100273995 
 tae-r.2   123086370   DNA-directed RNA polymerase V subunit 5A 
 tae-r.2   123091673   DNA-directed RNA polymerase V subunit 5A 
 tae-r.2   123096606   DNA-directed RNA polymerase V subunit 5A 
 hvu-r.1   123448180   DNA-directed RNA polymerase V subunit 5A-like 
 hvu-r.1   123399999   DNA-directed RNA polymerases IV and V subunit 5B-like 
 sbi-r.1   8085637   DNA-directed RNA polymerase V subunit 5A 
 bdi-r.1   100836489   DNA-directed RNA polymerase V subunit 5A 

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Top 50 coexpressed genes to 106445468 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106445468 (bna-r.1 coexpression data)

CoexMap"106391650"


bnaLOC106391650 | Entrez gene ID : 106391650    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 2 2 2 1 2 1 3 2 2 2 2 1 3 2 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (117 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein NP_001302841.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for NP_001302841.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001302841.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106445468
bna-r.1
for
106368028
bna-r.1
for
106431374
bra-r.6
for
103841615
ath-u.5
for
RPB5D
ath-u.5
for
NRPE5
ghi-r.1
for
107891355
ghi-r.1
for
107889380
cit-r.1
for
102611161
cit-r.1
for
102612864
gma-u.5
for
100306033
vvi-u.5
for
100258335
vvi-u.5
for
100853213
ppo-u.5
for
7458931
mtr-u.5
for
11419143
mtr-u.5
for
120579378
mtr-u.5
for
25489110
sly-u.5
for
101255881
sly-u.5
for
101252227
sot-r.1
for
102585816
sot-r.1
for
102596627
nta-r.1
for
107804980
nta-r.1
for
107775202
osa-u.5
for
4351463
osa-u.5
for
4349748
zma-u.5
for
100273995
tae-r.2
for
123086370
tae-r.2
for
123091673
tae-r.2
for
123096606
hvu-r.1
for
123448180
hvu-r.1
for
123399999
sbi-r.1
for
8085637
bdi-r.1
for
100836489


Ortholog ID: 3672
Species bna bna bra ath ath ghi ghi cit cit gma vvi vvi ppo mtr mtr mtr sly sly sot sot nta nta osa osa zma tae tae tae hvu hvu sbi bdi
Symbol LOC106368028 LOC106412073 LOC103841615 RPB5D NRPE5 LOC107891355 LOC107889380 LOC102611161 LOC102612864 LOC100306033 LOC100258335 LOC100853213 LOC7458931 LOC11419143 LOC120579378 LOC25489110 LOC101255881 LOC101252227 LOC102585816 LOC102596627 LOC107804980 LOC107775202 LOC4351463 LOC4349748 LOC100273995 LOC123086370 LOC123096606 LOC123111219 LOC123448180 LOC123399999 LOC8085637 LOC100836489
Function* DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A RNA polymerase II fifth largest subunit, D Eukaryotic rpb5 RNA polymerase subunit family protein DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5C DNA-directed RNA polymerase II subunit family protein DNA-directed RNA polymerase V subunit 5C DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerases IV and V subunit 5B DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A-like DNA-directed RNA polymerase V subunit 5A-like DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A-like DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A uncharacterized LOC100273995 DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerases IV and V subunit 5B DNA-directed RNA polymerase V subunit 5A-like DNA-directed RNA polymerases IV and V subunit 5B-like DNA-directed RNA polymerase V subunit 5A DNA-directed RNA polymerase V subunit 5A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00061 Fatty acid biosynthesis 8
bna01212 Fatty acid metabolism 8
bna00620 Pyruvate metabolism 7
bna01200 Carbon metabolism 7
bna00640 Propanoate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00061 Fatty acid biosynthesis 8
bna01212 Fatty acid metabolism 8
bna00620 Pyruvate metabolism 7
bna01200 Carbon metabolism 7
bna00640 Propanoate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00780 Biotin metabolism 3
bra01240 Biosynthesis of cofactors 3
bra00061 Fatty acid biosynthesis 3
bra01212 Fatty acid metabolism 3
bra00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi03082 ATP-dependent chromatin remodeling 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi03082 ATP-dependent chromatin remodeling 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04814 Motor proteins 2
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 3
gma03010 Ribosome 3
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00561 Glycerolipid metabolism 2
vvi00564 Glycerophospholipid metabolism 2
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 9
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03013 Nucleocytoplasmic transport 4
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 4
sly04120 Ubiquitin mediated proteolysis 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 5
sot03420 Nucleotide excision repair 5
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 4
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03430 Mismatch repair 2
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 4
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03430 Mismatch repair 2
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03040 Spliceosome 2
osa03020 RNA polymerase 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 4
tae03020 RNA polymerase 3
tae00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 4
tae03020 RNA polymerase 3
tae03010 Ribosome 3
tae03040 Spliceosome 2
tae00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00053 Ascorbate and aldarate metabolism 5
tae00480 Glutathione metabolism 5
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03013 Nucleocytoplasmic transport 2
bdi00261 Monobactam biosynthesis 2
bdi00300 Lysine biosynthesis 2
bdi01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106368028 106412073 103841615 818732 824875 107891355 107889380 102611161 102612864 100306033 100258335 100853213 7458931 11419143 120579378 25489110 101255881 101252227 102585816 102596627 107804980 107775202 4351463 4349748 100273995 123086370 123096606 123111219 123448180 123399999 8085637 100836489
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