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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106360661   DNA-directed RNA polymerases II, IV and V subunit 9B 
 bna-r.1   106413764   DNA-directed RNA polymerases II, IV and V subunit 9B 
 bra-r.6   103869943   DNA-directed RNA polymerases II, IV and V subunit 9B 
 bra-r.6   103849513   DNA-directed RNA polymerases II, IV and V subunit 9B 
 ath-u.5   NRPB9B   RNA polymerases M/15 Kd subunit 
 ghi-r.1   121232352   DNA-directed RNA polymerases II, IV and V subunit 9A 
 ghi-r.1   107936094   DNA-directed RNA polymerases II, IV and V subunit 9A 
 cit-r.1   102623490   DNA-directed RNA polymerases II, IV and V subunit 9A 
 gma-u.5   100806190   DNA-directed RNA polymerases II, IV and V subunit 9A 
 gma-u.5   100802125   DNA-directed RNA polymerases II, IV and V subunit 9A 
 gma-u.5   100305979   uncharacterized LOC100305979 
 vvi-u.5   100253286   DNA-directed RNA polymerases II, IV and V subunit 9A 
 ppo-u.5   7471115   DNA-directed RNA polymerases II, IV and V subunit 9A 
 mtr-u.5   11417477   DNA-directed RNA polymerases II, IV and V subunit 9A 
 sly-u.5   101264221   DNA-directed RNA polymerases II, IV and V subunit 9A 
 sot-r.1   102580987   DNA-directed RNA polymerases II, IV and V subunit 9A 
 nta-r.1   107782281   DNA-directed RNA polymerases II, IV and V subunit 9A 
 nta-r.1   107799275   DNA-directed RNA polymerases II, IV and V subunit 9A 
 osa-u.5   4331295   DNA-directed RNA polymerases II, IV and V subunit 9B 
 osa-u.5   4343902   DNA-directed RNA polymerases II, IV and V subunit 9A 
 osa-u.5   4352511   DNA-directed RNA polymerases II, IV and V subunit 9B 
 zma-u.5   103646824   DNA-directed RNA polymerases II, IV and V subunit 9A 
 zma-u.5   100285329   DNA-directed RNA polymerase II 14.5 kDa polypeptide 
 tae-r.2   123052094   DNA-directed RNA polymerases II, IV and V subunit 9A 
 tae-r.2   123044215   DNA-directed RNA polymerases II, IV and V subunit 9A 
 tae-r.2   123100691   DNA-directed RNA polymerases II, IV and V subunit 9A 
 hvu-r.1   123449987   DNA-directed RNA polymerases II, IV and V subunit 9A-like 
 hvu-r.1   123425308   DNA-directed RNA polymerases II, IV and V subunit 9A-like 
 hvu-r.1   123398346   DNA-directed RNA polymerases II, IV and V subunit 9B 
 sbi-r.1   8066017   DNA-directed RNA polymerases II, IV and V subunit 9A 
 sbi-r.1   8066366   DNA-directed RNA polymerases II, IV and V subunit 9B 
 sbi-r.1   8072556   DNA-directed RNA polymerases II, IV and V subunit 9A 
 bdi-r.1   100840396   DNA-directed RNA polymerases II, IV and V subunit 9A 
 bdi-r.1   100845538   DNA-directed RNA polymerases II, IV and V subunit 9A 
 bdi-r.1   100821357   DNA-directed RNA polymerases II, IV and V subunit 9B 
 cre-r.1   CHLRE_12g505750v5   uncharacterized protein 

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Top 50 coexpressed genes to 106360661 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106360661 (bna-r.1 coexpression data)

CoexMap"106391781"


bnaLOC106391781 | Entrez gene ID : 106391781    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 1 2 1 3 1 1 1 1 1 2 3 2 3 3 3 3 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0001193 [list] [network] maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II  (5 genes)  IEA  
GO:0006283 [list] [network] transcription-coupled nucleotide-excision repair  (11 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (114 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (76 genes)  IEA  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (117 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (3493 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (12766 genes)  IEA  
Protein XP_013687939.2 [sequence] [blastp]
XP_022546769.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto_nucl 4,  nucl 4,  cyto 4,  chlo 1  (predict for XP_013687939.2)
cyto 4,  nucl 3,  mito 1,  extr 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_022546769.1)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for XP_013687939.2)
mito 6,  other 4  (predict for XP_022546769.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106360661
bna-r.1
for
106413764
bra-r.6
for
103869943
bra-r.6
for
103849513
ath-u.5
for
NRPB9B
ghi-r.1
for
121232352
ghi-r.1
for
107936094
cit-r.1
for
102623490
gma-u.5
for
100806190
gma-u.5
for
100802125
gma-u.5
for
100305979
vvi-u.5
for
100253286
ppo-u.5
for
7471115
mtr-u.5
for
11417477
sly-u.5
for
101264221
sot-r.1
for
102580987
nta-r.1
for
107782281
nta-r.1
for
107799275
osa-u.5
for
4331295
osa-u.5
for
4343902
osa-u.5
for
4352511
zma-u.5
for
103646824
zma-u.5
for
100285329
tae-r.2
for
123052094
tae-r.2
for
123044215
tae-r.2
for
123100691
hvu-r.1
for
123449987
hvu-r.1
for
123425308
hvu-r.1
for
123398346
sbi-r.1
for
8066017
sbi-r.1
for
8066366
sbi-r.1
for
8072556
bdi-r.1
for
100840396
bdi-r.1
for
100845538
bdi-r.1
for
100821357
cre-r.1
for
CHLRE_12g505750v5


Ortholog ID: 3577
Species bna bna bra bra ath ghi ghi cit gma gma gma vvi ppo mtr sly sot nta nta osa osa osa zma zma tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC106360661 LOC125593482 LOC103869943 LOC103849513 NRPB9B LOC121232352 LOC107936094 LOC102623490 LOC100806190 LOC100802125 LOC100305979 LOC100253286 LOC7471115 LOC11417477 LOC101264221 LOC102580987 LOC107782281 LOC107799275 LOC4331295 LOC4343902 LOC4352511 LOC103646824 LOC100285329 LOC123052094 LOC123100691 LOC123449987 LOC123425308 LOC123398346 LOC8066366 LOC8072556 LOC8079185 LOC100840396 LOC100845538 LOC100821357 CHLRE_12g505750v5
Function* DNA-directed RNA polymerases II, IV and V subunit 9B DNA-directed RNA polymerases II, IV and V subunit 9B DNA-directed RNA polymerases II, IV and V subunit 9B DNA-directed RNA polymerases II, IV and V subunit 9B RNA polymerases M/15 Kd subunit DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A uncharacterized LOC100305979 DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9B DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9B DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerase II 14.5 kDa polypeptide DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A-like DNA-directed RNA polymerases II, IV and V subunit 9A-like DNA-directed RNA polymerases II, IV and V subunit 9B DNA-directed RNA polymerases II, IV and V subunit 9B DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna03018 RNA degradation 2
bna03040 Spliceosome 2
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 7
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra01240 Biosynthesis of cofactors 2
bra00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 6
bra03040 Spliceosome 4
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 8
ath03040 Spliceosome 5
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00920 Sulfur metabolism 2
ghi01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00920 Sulfur metabolism 2
ghi01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03018 RNA degradation 3
cit03010 Ribosome 3
cit04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 11
gma03040 Spliceosome 3
gma04144 Endocytosis 3
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 4
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
gma04141 Protein processing in endoplasmic reticulum 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03020 RNA polymerase 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr03020 RNA polymerase 4
mtr03420 Nucleotide excision repair 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
sot03020 RNA polymerase 3
sot03420 Nucleotide excision repair 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 4
nta03018 RNA degradation 4
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 4
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03020 RNA polymerase 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
zma03040 Spliceosome 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
zma03018 RNA degradation 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03018 RNA degradation 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
hvu03013 Nucleocytoplasmic transport 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 5
sbi00010 Glycolysis / Gluconeogenesis 4
sbi00710 Carbon fixation by Calvin cycle 4
sbi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi00190 Oxidative phosphorylation 2
sbi03050 Proteasome 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03420 Nucleotide excision repair 4
bdi04141 Protein processing in endoplasmic reticulum 3
bdi04144 Endocytosis 3
bdi03040 Spliceosome 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03420 Nucleotide excision repair 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03420 Nucleotide excision repair 4
cre03020 RNA polymerase 3
cre03040 Spliceosome 3
cre04120 Ubiquitin mediated proteolysis 3
cre04141 Protein processing in endoplasmic reticulum 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106360661 125593482 103869943 103849513 827321 121232352 107936094 102623490 100806190 100802125 100305979 100253286 7471115 11417477 101264221 102580987 107782281 107799275 4331295 4343902 4352511 103646824 100285329 123052094 123100691 123449987 123425308 123398346 8066366 8072556 8079185 100840396 100845538 100821357 5716471
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