ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106392098	trimethylguanosine synthase-like
ath-u.5	AT1G30550	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
ath-u.5	AT1G45231	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
ath-u.5	AT1G30545	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
gma-u.5	100782129	trimethylguanosine synthase
vvi-u.5	100262697	uncharacterized LOC100262697
vvi-u.5	100262065	uncharacterized LOC100262065
ppo-u.5	18104882	uncharacterized LOC18104882
mtr-u.5	11428036	trimethylguanosine synthase
sly-u.5	101266167	uncharacterized LOC101266167
sly-u.5	101263590	uncharacterized LOC101263590
osa-u.5	4333042	uncharacterized LOC4333042
zma-u.5	100277845	uncharacterized LOC100277845

Annotation

functional annotation

KEGG

GO BP

GO:0036261 [list] [network] 7-methylguanosine cap hypermethylation	(12 genes)	IEA
GO:0009452 [list] [network] 7-methylguanosine RNA capping	(27 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(9971 genes)

IEA

GO MF

GO:0071164 [list] [network] RNA cap trimethylguanosine synthase activity	(12 genes)	IEA
GO:0005515 [list] [network] protein binding	(12789 genes)	IEA

Protein

XP_013688326.1 [sequence] [blastp]
XP_013688327.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 1, mito 1, E.R. 1, cyto_E.R. 1	(predict for XP_013688326.1)
nucl 4, cyto 1, mito 1, E.R. 1, cyto_E.R. 1	(predict for XP_013688327.1)

Subcellular
localization
TargetP

other 8	(predict for XP_013688326.1)
other 8	(predict for XP_013688327.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106392098	ath-u.5 for AT1G30550	ath-u.5 for AT1G45231	ath-u.5 for AT1G30545	gma-u.5 for 100782129	vvi-u.5 for 100262697	vvi-u.5 for 100262065	ppo-u.5 for 18104882	mtr-u.5 for 11428036	sly-u.5 for 101266167	sly-u.5 for 101263590	osa-u.5 for 4333042	zma-u.5 for 100277845

Ortholog

Ortholog ID: 2859

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

hvu

sbi

bdi

cre

Symbol

Function^*

trimethylguanosine synthase-like

trimethylguanosine synthase

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

S-adenosyl-L-methionine-dependent methyltransferase superfamily protein

trimethylguanosine synthase

uncharacterized LOC102608303

trimethylguanosine synthase

uncharacterized LOC100262697

uncharacterized LOC100262065

uncharacterized LOC18104882

trimethylguanosine synthase

uncharacterized LOC101263590

uncharacterized LOC101266167

trimethylguanosine synthase

uncharacterized LOC102606264

uncharacterized LOC107832327

uncharacterized LOC107819562

uncharacterized LOC4333042

uncharacterized LOC100277845

trimethylguanosine synthase-like

uncharacterized LOC123452415

uncharacterized LOC8080440

trimethylguanosine synthase

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00100	Steroid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03020	RNA polymerase	2
vvi03420	Nucleotide excision repair	2
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	3
sbi03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

111210505

103868442

103833434

841092

28717281

107910222

102608303

100782129

100262697

100262065

18104882

11428036

101263590

101266167

102588042

102606264

107832327

107819562

4333042

100277845

123408988

123452415

8080440

100828859

100844736

5721086

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106392098 (bna-r.1 coexpression data)

Top 50 enrichment test to 106392098 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	sbi	ghi	sot	nta	cre	tae
Paralog	1	3	1	2	1	1	2	1	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106392098 (bna-r.1 coexpression data)

Top 50 enrichment test to 106392098 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**