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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106396318   carbon catabolite repressor protein 4 homolog 2 
 ath-u.5   AT3G58560   DNAse I-like superfamily protein 
 ath-u.5   AT3G58580   DNAse I-like superfamily protein 
 gma-u.5   100808935   carbon catabolite repressor protein 4 homolog 1 
 gma-u.5   100775270   carbon catabolite repressor protein 4 homolog 1 
 gma-u.5   100819402   carbon catabolite repressor protein 4 homolog 1 
 vvi-u.5   100265801   carbon catabolite repressor protein 4 homolog 1 
 ppo-u.5   7469907   carbon catabolite repressor protein 4 homolog 1 
 ppo-u.5   7479509   carbon catabolite repressor protein 4 homolog 1 
 mtr-u.5   25483567   carbon catabolite repressor protein 4 homolog 2 
 mtr-u.5   25499554   carbon catabolite repressor protein 4 homolog 1 
 sly-u.5   101256818   carbon catabolite repressor protein 4 homolog 1 
 sly-u.5   101255473   carbon catabolite repressor protein 4 homolog 1-like 
 osa-u.5   4331740   carbon catabolite repressor protein 4 homolog 1 
 osa-u.5   4348610   carbon catabolite repressor protein 4 homolog 1 
 zma-u.5   100279626   uncharacterized LOC100279626 
 zma-u.5   100280629   CCR4-NOT transcription complex subunit 6 
 zma-u.5   100279717   uncharacterized LOC100279717 

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Top 50 coexpressed genes to 106396318 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106396318 (bna-r.1 coexpression data)

CoexMap"106396318"


bnaLOC106396318 | Entrez gene ID : 106396318    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 2 3 1 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
GO BP
GO:0000289 [list] [network] nuclear-transcribed mRNA poly(A) tail shortening  (21 genes)  IEA  
GO CC
GO:0030014 [list] [network] CCR4-NOT complex  (105 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0004535 [list] [network] poly(A)-specific ribonuclease activity  (42 genes)  IEA  
Protein XP_013692126.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  nucl 3  (predict for XP_013692126.2)
Subcellular
localization
TargetP
other 6  (predict for XP_013692126.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106396318

.
ath-u.5
for
AT3G58560

.
ath-u.5
for
AT3G58580

.
gma-u.5
for
100808935

.
gma-u.5
for
100775270

.
gma-u.5
for
100819402

.
vvi-u.5
for
100265801

.
ppo-u.5
for
7469907

.
ppo-u.5
for
7479509

.
mtr-u.5
for
25483567

.
mtr-u.5
for
25499554

.
sly-u.5
for
101256818

.
sly-u.5
for
101255473

.
osa-u.5
for
4331740

.
osa-u.5
for
4348610

.
zma-u.5
for
100279626

.
zma-u.5
for
100280629

.
zma-u.5
for
100279717

.


Ortholog ID: 3819
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi nta nta
Symbol AT3G58560 AT3G58580 LOC100775270 LOC100819402 LOC101255473 LOC101256818 LOC4348610 LOC4331740 LOC100280629 LOC100279626 LOC103830166 LOC103830169 LOC100265801 LOC7469907 LOC7479509 LOC25483567 LOC25499554 LOC123043896 LOC123180866 LOC123429162 LOC107891241 LOC107922222 LOC106418709 LOC106353185 CHLRE_11g475900v5 LOC8066931 LOC110429948 LOC102601337 LOC102598581 LOC102615682 LOC100820928 LOC107759403 LOC107777079
Function* DNAse I-like superfamily protein DNAse I-like superfamily protein carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 CCR4-NOT transcription complex subunit 6 uncharacterized LOC100279626 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 2 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 2 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 2 uncharacterized protein carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 5
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 6
gma03015 mRNA surveillance pathway 3
gma04382 Cornified envelope formation 3
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04120 Ubiquitin mediated proteolysis 2
gma00260 Glycine, serine and threonine metabolism 2
gma00460 Cyanoamino acid metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 3
sly04144 Endocytosis 3
sly03250 Viral life cycle - HIV-1 2
sly03272 Virion - Hepatitis viruses 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 5
zma03018 RNA degradation 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 7
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 6
ppo04142 Lysosome 5
ppo05100 Bacterial invasion of epithelial cells 3
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 7
ppo03420 Nucleotide excision repair 3
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr03050 Proteasome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03013 Nucleocytoplasmic transport 2
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 3
mtr04141 Protein processing in endoplasmic reticulum 2
mtr04070 Phosphatidylinositol signaling system 2
mtr04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae03018 RNA degradation 3
tae00510 N-Glycan biosynthesis 2
tae00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae03018 RNA degradation 3
tae00510 N-Glycan biosynthesis 2
tae00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 5
ghi04146 Peroxisome 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 5
ghi04146 Peroxisome 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03050 Proteasome 3
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 3
cre03040 Spliceosome 2
cre03015 mRNA surveillance pathway 2
cre04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 5
sot04120 Ubiquitin mediated proteolysis 3
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03083 Polycomb repressive complex 3
sot04712 Circadian rhythm - plant 3
sot03018 RNA degradation 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03018 RNA degradation 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 5
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 5
nta00900 Terpenoid backbone biosynthesis 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825025 825027 100775270 100819402 101255473 101256818 4348610 4331740 100280629 100279626 103830166 103830169 100265801 7469907 7479509 25483567 25499554 123043896 123180866 123429162 107891241 107922222 106418709 106353185 5727565 8066931 110429948 102601337 102598581 102615682 100820928 107759403 107777079
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