Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106397672   sm-like protein LSM3B 
 ath-u.5   LSM3A   Small nuclear ribonucleoprotein family protein 
 ath-u.5   LSM3B   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100499782   uncharacterized LOC100499782 
 gma-u.5   100306547   uncharacterized LOC100306547 
 vvi-u.5   100253870   sm-like protein LSM3B 
 ppo-u.5   7467821   sm-like protein LSM3B 
 ppo-u.5   7469218   sm-like protein LSM3B 
 mtr-u.5   11446185   sm-like protein LSM3A 
 sly-u.5   101264277   sm-like protein LSM3A 
 osa-u.5   4325074   sm-like protein LSM3A 
 zma-u.5   100194361   uncharacterized LOC100194361 

close


Top 50 coexpressed genes to 106397672 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 106397672 (bna-r.1 coexpression data)

CoexMap"106397672"


bnaLOC106397672 | Entrez gene ID : 106397672    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 2 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0033962 [list] [network] P-body assembly  (48 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (27 genes)  IEA  
GO:0005688 [list] [network] U6 snRNP  (34 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (91 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (154 genes)  IEA  
GO:0000932 [list] [network] P-body  (160 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013693751.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  extr 1,  chlo 1,  E.R. 1,  cysk 1,  golg 1  (predict for XP_013693751.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013693751.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106397672

.
ath-u.5
for
LSM3A

.
ath-u.5
for
LSM3B

.
gma-u.5
for
100499782

.
gma-u.5
for
100306547

.
vvi-u.5
for
100253870

.
ppo-u.5
for
7467821

.
ppo-u.5
for
7469218

.
mtr-u.5
for
11446185

.
sly-u.5
for
101264277

.
osa-u.5
for
4325074

.
zma-u.5
for
100194361

.


Ortholog ID: 4465
Species ath ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol LSM3A LSM3B LOC100499782 LOC100306547 LOC101264277 LOC4325074 LOC100194361 LOC103830597 LOC103832139 LOC100253870 LOC7467821 LOC7469218 LOC11446185 LOC123057691 LOC123071535 LOC123444803 LOC123446676 LOC107932177 LOC121217861 LOC106376728 LOC106353502 CHLRE_16g662300v5 LOC8060974 LOC102597966 LOC102612141 LOC100822834 LOC107815981 LOC107822166
Function* Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein uncharacterized LOC100499782 uncharacterized LOC100306547 sm-like protein LSM3A sm-like protein LSM3A uncharacterized LOC100194361 sm-like protein LSM3B sm-like protein LSM3B sm-like protein LSM3B sm-like protein LSM3B sm-like protein LSM3B sm-like protein LSM3A sm-like protein LSM3A sm-like protein LSM3B sm-like protein LSM3A sm-like protein LSM3A sm-like protein LSM3A sm-like protein LSM3B sm-like protein LSM3B sm-like protein LSM3B uncharacterized protein sm-like protein LSM3B sm-like protein LSM3A sm-like protein LSM3B sm-like protein LSM3B sm-like protein LSM3A sm-like protein LSM3A
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03018 RNA degradation 3
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03050 Proteasome 3
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma03040 Spliceosome 4
gma03018 RNA degradation 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa03040 Spliceosome 6
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03018 RNA degradation 4
zma03008 Ribosome biogenesis in eukaryotes 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra00190 Oxidative phosphorylation 2
bra03018 RNA degradation 2
bra03010 Ribosome 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03018 RNA degradation 4
ppo03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo00190 Oxidative phosphorylation 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 9
tae03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 8
tae03040 Spliceosome 8
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 5
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03018 RNA degradation 6
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
cre03018 RNA degradation 2
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 8
sbi03010 Ribosome 5
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 3
sot03050 Proteasome 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03050 Proteasome 3
bdi03010 Ribosome 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta03040 Spliceosome 6
nta03018 RNA degradation 4
nta03020 RNA polymerase 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta03040 Spliceosome 6
nta03018 RNA degradation 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838714 844021 100499782 100306547 101264277 4325074 100194361 103830597 103832139 100253870 7467821 7469218 11446185 123057691 123071535 123444803 123446676 107932177 121217861 106376728 106353502 5723508 8060974 102597966 102612141 100822834 107815981 107822166
The preparation time of this page was 0.2 [sec].