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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G28956   RNA polymerase II, Rpb4, core protein 
 ath-u.5   AT5G62950   RNA polymerase II, Rpb4, core protein 
 vvi-u.5   100259966   uncharacterized LOC100259966 
 ppo-u.5   7466866   uncharacterized LOC7466866 
 mtr-u.5   25496379   uncharacterized LOC25496379 
 mtr-u.5   120575910   DNA-directed RNA polymerase III subunit RPC9 
 mtr-u.5   120575911   DNA-directed RNA polymerase III subunit RPC9 
 sly-u.5   101258513   uncharacterized LOC101258513 
 osa-u.5   4352240   uncharacterized LOC4352240 
 zma-u.5   109943977   DNA-directed RNA polymerase III subunit RPC9-like 
 zma-u.5   109943978   uncharacterized LOC109943978 
 zma-u.5   109939175   uncharacterized LOC109939175 

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Top 50 coexpressed genes to AT3G28956 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G28956 (ath-u.5 coexpression data)

CoexMap"106399826"


bnaLOC106399826 | Entrez gene ID : 106399826    
Species ath vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta gma bna
Paralog 2 1 1 3 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006384 [list] [network] transcription initiation at RNA polymerase III promoter  (27 genes)  IEA  
GO CC
GO:0005666 [list] [network] RNA polymerase III complex  (74 genes)  IEA  
GO MF
GO:0000166 [list] [network] nucleotide binding  (8037 genes)  IEA  
Protein XP_013695730.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 2,  extr 1,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_013695730.1)
Subcellular
localization
TargetP
other 6  (predict for XP_013695730.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AT3G28956

.
ath-u.5
for
AT5G62950

.
vvi-u.5
for
100259966

.
ppo-u.5
for
7466866

.
mtr-u.5
for
25496379

.
mtr-u.5
for
120575910

.
mtr-u.5
for
120575911

.
sly-u.5
for
101258513

.
osa-u.5
for
4352240

.
zma-u.5
for
109943977

.
zma-u.5
for
109943978

.
zma-u.5
for
109939175

.


Ortholog ID: 3938
Species ath ath sly osa zma zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna cre sbi sot cit bdi nta nta
Symbol AT3G28956 AT5G62950 LOC101258513 LOC4352240 LOC109943977 LOC109943978 LOC103855032 LOC100259966 LOC7466866 LOC25496377 LOC25496379 LOC123041851 LOC123049813 LOC123430709 LOC107927637 LOC107941606 LOC125574923 CHLRE_13g564550v5 LOC8063274 LOC102587541 LOC102623208 LOC100837108 LOC107812661 LOC107817299
Function* RNA polymerase II, Rpb4, core protein RNA polymerase II, Rpb4, core protein uncharacterized LOC101258513 uncharacterized LOC4352240 DNA-directed RNA polymerase III subunit RPC9-like uncharacterized LOC109943978 uncharacterized LOC103855032 uncharacterized LOC100259966 uncharacterized LOC7466866 DNA-directed RNA polymerase III subunit RPC9 uncharacterized LOC25496379 uncharacterized LOC123041851 uncharacterized LOC123049813 uncharacterized LOC123430709 DNA-directed RNA polymerase III subunit RPC9 DNA-directed RNA polymerase III subunit RPC9 uncharacterized LOC125574923 uncharacterized protein uncharacterized LOC8063274 uncharacterized LOC102587541 uncharacterized LOC102623208 uncharacterized LOC100837108 uncharacterized LOC107812661 uncharacterized LOC107817299
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 3
ath04144 Endocytosis 2
ath00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath03008 Ribosome biogenesis in eukaryotes 2
ath03083 Polycomb repressive complex 2
ath04712 Circadian rhythm - plant 2
ath04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 13
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03018 RNA degradation 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03018 RNA degradation 2
nta03020 RNA polymerase 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822534 836415 101258513 4352240 109943977 109943978 103855032 100259966 7466866 25496377 25496379 123041851 123049813 123430709 107927637 107941606 125574923 5719024 8063274 102587541 102623208 100837108 107812661 107817299
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