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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106400775   phytochrome B-like 
 ath-u.5   PHYB   phytochrome B 
 ath-u.5   PHYD   phytochrome D 
 ath-u.5   PHYE   phytochrome E 
 gma-u.5   PHYE1   phytochrome E-like 
 gma-u.5   PHYE2   phytochrome E-like 
 gma-u.5   PHYB   phytochrome B-like 
 vvi-u.5   PHYE   phytochrome E 
 vvi-u.5   100261882   phytochrome B 
 ppo-u.5   7485902   phytochrome B 
 ppo-u.5   7485825   phytochrome B 
 mtr-u.5   11420025   phytochrome B-2 
 sly-u.5   PHYE   phytochrome E 
 sly-u.5   PHYB2   phytochrome B2 
 sly-u.5   PHYB1   phytochrome B1 
 osa-u.5   4332623   phytochrome B-like 
 zma-u.5   100383702   Phytochrome B 
 zma-u.5   100381811   phytochromeB2 

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Top 50 coexpressed genes to 106400775 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106400775 (bna-r.1 coexpression data)

CoexMap"106400775"


bnaLOC106400775 | Entrez gene ID : 106400775    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 3 3 2 2 1 3 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna04712 [list] [network] Circadian rhythm - plant (144 genes)
GO BP
GO:0009584 [list] [network] detection of visible light  (12 genes)  IEA  
GO:0009585 [list] [network] red, far-red light phototransduction  (12 genes)  IEA  
GO:0017006 [list] [network] protein-tetrapyrrole linkage  (17 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (5322 genes)  IEA  
GO CC
GO MF
GO:0009881 [list] [network] photoreceptor activity  (18 genes)  IEA  
GO:0042803 [list] [network] protein homodimerization activity  (31 genes)  IEA  
GO:0000155 [list] [network] phosphorelay sensor kinase activity  (41 genes)  IEA  
Protein XP_022559055.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  plas 2,  cyto_nucl 2,  cysk_nucl 2  (predict for XP_022559055.2)
Subcellular
localization
TargetP
other 6,  chlo 5  (predict for XP_022559055.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106400775

.
ath-u.5
for
PHYB

.
ath-u.5
for
PHYD

.
ath-u.5
for
PHYE

.
gma-u.5
for
PHYE1

.
gma-u.5
for
PHYE2

.
gma-u.5
for
PHYB

.
vvi-u.5
for
PHYE

.
vvi-u.5
for
100261882

.
ppo-u.5
for
7485902

.
ppo-u.5
for
7485825

.
mtr-u.5
for
11420025

.
sly-u.5
for
PHYE

.
sly-u.5
for
PHYB2

.
sly-u.5
for
PHYB1

.
osa-u.5
for
4332623

.
zma-u.5
for
100383702

.
zma-u.5
for
100381811

.


Ortholog ID: 3650
Species ath ath gma gma sly sly osa zma zma bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit cit bdi nta nta
Symbol PHYB PHYE PHYE1 PHYE2 PHYE PHYB2 LOC4332623 LOC100381811 LOC100383702 LOC103869720 PHYE LOC100261882 LOC7485825 LOC7485902 LOC11420025 LOC100137004 LOC123097663 LOC123448812 LOC107896595 LOC121202968 LOC106400775 LOC106360866 LOC8081072 LOC102577925 LOC102580316 LOC102618185 LOC102608760 LOC100829838 LOC107782401 LOC107767359
Function* phytochrome B phytochrome E phytochrome E-like phytochrome E-like phytochrome E phytochrome B2 phytochrome B-like phytochromeB2 Phytochrome B phytochrome B phytochrome E phytochrome B phytochrome B phytochrome B phytochrome B-2 phytochrome B phytochrome B phytochrome B phytochrome B phytochrome E phytochrome B-like phytochrome E phytochrome B phytochrome B phytochrome B-like phytochrome B phytochrome E phytochrome B phytochrome B phytochrome B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00020 Citrate cycle (TCA cycle) 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly00906 Carotenoid biosynthesis 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma00010 Glycolysis / Gluconeogenesis 2
zma00030 Pentose phosphate pathway 2
zma00051 Fructose and mannose metabolism 2
zma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 3
vvi00460 Cyanoamino acid metabolism 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi00562 Inositol phosphate metabolism 2
vvi04070 Phosphatidylinositol signaling system 2
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae03082 ATP-dependent chromatin remodeling 3
tae04712 Circadian rhythm - plant 3
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 5
nta04517 IgSF CAM signaling 2
nta04518 Integrin signaling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816394 827538 100808192 100800339 101253446 101264523 4332623 100381811 100383702 103869720 100264019 100261882 7485825 7485902 11420025 100137004 123097663 123448812 107896595 121202968 106400775 106360866 8081072 102577925 102580316 102618185 102608760 100829838 107782401 107767359
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