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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106401954   DNA-directed RNA polymerases II, IV and V subunit 6A 
 bna-r.1   106390928   DNA-directed RNA polymerases II, IV and V subunit 6A 
 bna-r.1   106390217   DNA-directed RNA polymerases II, IV and V subunit 6A 
 bna-r.1   106446012   DNA-directed RNA polymerases II, IV and V subunit 6A 
 bra-r.6   103837016   DNA-directed RNA polymerases II, IV and V subunit 6A 
 ath-u.5   NRPB6B   RNA polymerase Rpb6 
 ath-u.5   NRPB6A   RNA polymerase Rpb6 
 ghi-r.1   107904617   DNA-directed RNA polymerases II, IV and V subunit 6A 
 ghi-r.1   107922778   DNA-directed RNA polymerases II, IV and V subunit 6A 
 ghi-r.1   121219797   DNA-directed RNA polymerases II and V subunit 6B 
 cit-r.1   102623212   DNA-directed RNA polymerases II, IV and V subunit 6A 
 gma-u.5   100794926   DNA-directed RNA polymerases II, IV and V subunit 6A 
 gma-u.5   100305739   uncharacterized LOC100305739 
 vvi-u.5   100253791   DNA-directed RNA polymerases II, IV and V subunit 6A 
 vvi-u.5   100243758   DNA-directed RNA polymerases II and V subunit 6B 
 ppo-u.5   7484401   DNA-directed RNA polymerases II, IV and V subunit 6A 
 ppo-u.5   7474023   DNA-directed RNA polymerases II, IV and V subunit 6A 
 mtr-u.5   25479674   DNA-directed RNA polymerases II, IV and V subunit 6A 
 mtr-u.5   11444744   DNA-directed RNA polymerases II, IV and V subunit 6A 
 sly-u.5   101259186   DNA-directed RNA polymerases II and V subunit 6B 
 sot-r.1   102584130   DNA-directed RNA polymerases II and V subunit 6B-like 
 nta-r.1   107810104   DNA-directed RNA polymerases II and V subunit 6B 
 nta-r.1   107793869   DNA-directed RNA polymerases II and V subunit 6B 
 nta-r.1   107770258   DNA-directed RNA polymerases II and V subunit 6B 
 osa-u.5   4333343   DNA-directed RNA polymerases II, IV and V subunit 6A 
 osa-u.5   4343168   DNA-directed RNA polymerases II, IV and V subunit 6A 
 zma-u.5   100283558   uncharacterized LOC100283558 
 zma-u.5   100282532   DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide 
 tae-r.2   123052087   DNA-directed RNA polymerases II, IV and V subunit 6A 
 tae-r.2   123044209   DNA-directed RNA polymerases II, IV and V subunit 6A 
 tae-r.2   123187944   DNA-directed RNA polymerases II, IV and V subunit 6A 
 hvu-r.1   123425302   DNA-directed RNA polymerases II, IV and V subunit 6A-like 
 sbi-r.1   8059770   DNA-directed RNA polymerases II, IV and V subunit 6A 
 sbi-r.1   110431821   DNA-directed RNA polymerases II, IV and V subunit 6A-like 
 bdi-r.1   100844296   DNA-directed RNA polymerases II and V subunit 6B 
 bdi-r.1   100845664   DNA-directed RNA polymerases II and V subunit 6B 
 cre-r.1   CHLRE_01g002200v5   uncharacterized protein 

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Top 50 coexpressed genes to 106401954 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106401954 (bna-r.1 coexpression data)

CoexMap"106401954"


bnaLOC106401954 | Entrez gene ID : 106401954    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 3 1 2 2 2 2 1 1 3 2 2 3 1 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (52 genes)  IEA  
GO:0005666 [list] [network] RNA polymerase III complex  (74 genes)  IEA  
GO:0005665 [list] [network] RNA polymerase II, core complex  (76 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (117 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_013698033.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  extr 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_013698033.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013698033.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106401954
bna-r.1
for
106390928
bna-r.1
for
106390217
bna-r.1
for
106446012
bra-r.6
for
103837016
ath-u.5
for
NRPB6B
ath-u.5
for
NRPB6A
ghi-r.1
for
107904617
ghi-r.1
for
107922778
ghi-r.1
for
121219797
cit-r.1
for
102623212
gma-u.5
for
100794926
gma-u.5
for
100305739
vvi-u.5
for
100253791
vvi-u.5
for
100243758
ppo-u.5
for
7484401
ppo-u.5
for
7474023
mtr-u.5
for
25479674
mtr-u.5
for
11444744
sly-u.5
for
101259186
sot-r.1
for
102584130
nta-r.1
for
107810104
nta-r.1
for
107793869
nta-r.1
for
107770258
osa-u.5
for
4333343
osa-u.5
for
4343168
zma-u.5
for
100283558
zma-u.5
for
100282532
tae-r.2
for
123052087
tae-r.2
for
123044209
tae-r.2
for
123187944
hvu-r.1
for
123425302
sbi-r.1
for
8059770
sbi-r.1
for
110431821
bdi-r.1
for
100844296
bdi-r.1
for
100845664
cre-r.1
for
CHLRE_01g002200v5


Ortholog ID: 5050
Species bna bna bna bra ath ath ghi ghi ghi cit gma gma vvi vvi ppo ppo mtr mtr sly sot nta nta nta osa osa zma zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol LOC106401954 LOC106390928 LOC106446012 LOC103837016 NRPB6B NRPB6A LOC107904617 LOC107922778 LOC107909149 LOC102623212 LOC100794926 LOC100305739 LOC100253791 LOC100243758 LOC7484401 LOC7474023 LOC25479674 LOC11444744 LOC101259186 LOC102584130 LOC107810104 LOC107793869 LOC107770258 LOC4333343 LOC4343168 LOC100283558 LOC100282532 LOC123052087 LOC123044209 LOC123187944 LOC123425302 LOC8059770 LOC110431821 LOC100844296 LOC100845664 CHLRE_01g002200v5
Function* DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A RNA polymerase Rpb6 RNA polymerase Rpb6 DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A uncharacterized LOC100305739 DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II and V subunit 6B-like DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A uncharacterized LOC100283558 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A-like DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A-like DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II and V subunit 6B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
bna03010 Ribosome 4
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 6
bna03420 Nucleotide excision repair 6
bna03010 Ribosome 5
bna03082 ATP-dependent chromatin remodeling 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
bna03082 ATP-dependent chromatin remodeling 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra03040 Spliceosome 5
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03018 RNA degradation 4
ath03020 RNA polymerase 3
ath03420 Nucleotide excision repair 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 6
ghi03018 RNA degradation 4
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 6
ghi03018 RNA degradation 4
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi00020 Citrate cycle (TCA cycle) 2
ghi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 15
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03040 Spliceosome 3
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi00920 Sulfur metabolism 2
vvi01200 Carbon metabolism 2
vvi01230 Biosynthesis of amino acids 2
vvi01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03420 Nucleotide excision repair 3
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03040 Spliceosome 2
ppo03020 RNA polymerase 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03010 Ribosome 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03040 Spliceosome 3
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
nta03010 Ribosome 3
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 4
osa03420 Nucleotide excision repair 4
osa03040 Spliceosome 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 3
zma03040 Spliceosome 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03420 Nucleotide excision repair 3
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
zma03020 RNA polymerase 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03420 Nucleotide excision repair 5
tae03250 Viral life cycle - HIV-1 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03050 Proteasome 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 4
sbi03040 Spliceosome 3
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
bdi03420 Nucleotide excision repair 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
bdi03420 Nucleotide excision repair 2
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106401954 106390928 106446012 103837016 815006 835269 107904617 107922778 107909149 102623212 100794926 100305739 100253791 100243758 7484401 7474023 25479674 11444744 101259186 102584130 107810104 107793869 107770258 4333343 4343168 100283558 100282532 123052087 123044209 123187944 123425302 8059770 110431821 100844296 100845664 5725893
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