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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106403096   pre-mRNA-splicing factor CWC22 homolog 
 bna-r.1   106430744   pre-mRNA-splicing factor CWC22 homolog 
 bna-r.1   106429700   pre-mRNA-splicing factor CWC22 homolog 
 bra-r.6   103832444   pre-mRNA-splicing factor CWC22 homolog 
 bra-r.6   103853206   pre-mRNA-splicing factor CWC22 homolog 
 bra-r.6   103831421   pre-mRNA-splicing factor CWC22 homolog 
 ath-u.5   AT1G80930   MIF4G domain-containing protein / MA3 domain-containing protein 
 ghi-r.1   107910275   pre-mRNA-splicing factor CWC22 homolog 
 ghi-r.1   107887045   pre-mRNA-splicing factor CWC22 homolog 
 cit-r.1   102629709   uncharacterized LOC102629709 
 gma-u.5   100814050   pre-mRNA-splicing factor CWC22 homolog 
 gma-u.5   100788669   pre-mRNA-splicing factor CWC22 homolog 
 vvi-u.5   100246500   uncharacterized LOC100246500 
 ppo-u.5   7460377   uncharacterized LOC7460377 
 mtr-u.5   25490373   pre-mRNA-splicing factor CWC22 homolog 
 sly-u.5   101266026   uncharacterized LOC101266026 
 sly-u.5   101263922   uncharacterized LOC101263922 
 sot-r.1   102587492   pre-mRNA-splicing factor CWC22 homolog 
 sot-r.1   102602792   pre-mRNA-splicing factor CWC22 homolog 
 nta-r.1   107808396   uncharacterized LOC107808396 
 nta-r.1   107761431   uncharacterized LOC107761431 
 nta-r.1   107797498   uncharacterized LOC107797498 
 osa-u.5   4351904   uncharacterized LOC4351904 
 zma-u.5   103640938   pre-mRNA-splicing factor CWC22 homolog 
 tae-r.2   123072134   pre-mRNA-splicing factor CWC22 homolog 
 tae-r.2   123063227   pre-mRNA-splicing factor CWC22 homolog 
 hvu-r.1   123445327   pre-mRNA-splicing factor CWC22 homolog 
 sbi-r.1   8054964   pre-mRNA-splicing factor CWC22 homolog 
 bdi-r.1   100840252   pre-mRNA-splicing factor CWC22 homolog 
 cre-r.1   CHLRE_06g259800v5   uncharacterized protein 

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Top 50 coexpressed genes to 106403096 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106403096 (bna-r.1 coexpression data)

CoexMap"106403096"


bnaLOC106403096 | Entrez gene ID : 106403096    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 3 1 2 1 2 1 1 1 2 2 3 1 1 2 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_013699401.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for XP_013699401.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for XP_013699401.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106403096
bna-r.1
for
106430744
bna-r.1
for
106429700
bra-r.6
for
103832444
bra-r.6
for
103853206
bra-r.6
for
103831421
ath-u.5
for
AT1G80930
ghi-r.1
for
107910275
ghi-r.1
for
107887045
cit-r.1
for
102629709
gma-u.5
for
100814050
gma-u.5
for
100788669
vvi-u.5
for
100246500
ppo-u.5
for
7460377
mtr-u.5
for
25490373
sly-u.5
for
101266026
sly-u.5
for
101263922
sot-r.1
for
102587492
sot-r.1
for
102602792
nta-r.1
for
107808396
nta-r.1
for
107761431
nta-r.1
for
107797498
osa-u.5
for
4351904
zma-u.5
for
103640938
tae-r.2
for
123072134
tae-r.2
for
123063227
hvu-r.1
for
123445327
sbi-r.1
for
8054964
bdi-r.1
for
100840252
cre-r.1
for
CHLRE_06g259800v5


Ortholog ID: 4018
Species bna bna bna bra bra bra ath ghi ghi cit gma gma vvi ppo mtr sly sly sot sot nta nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC106403096 LOC106430744 LOC106429700 LOC103832444 LOC103853206 LOC103831421 AT1G80930 LOC107910275 LOC107887045 LOC102629709 LOC100814050 LOC100788669 LOC100246500 LOC7460377 LOC25490373 LOC101263922 LOC101256753 LOC102587492 LOC102602792 LOC107808396 LOC107761431 LOC107797498 LOC4351904 LOC103640938 LOC123072134 LOC123063227 LOC123445327 LOC8054964 LOC100840252 CHLRE_06g259800v5
Function* pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog MIF4G domain-containing protein / MA3 domain-containing protein pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog uncharacterized LOC102629709 pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog uncharacterized LOC100246500 uncharacterized LOC7460377 pre-mRNA-splicing factor CWC22 homolog uncharacterized LOC101263922 uncharacterized LOC101256753 pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog uncharacterized LOC107808396 uncharacterized LOC107761431 uncharacterized LOC107797498 uncharacterized LOC4351904 pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog pre-mRNA-splicing factor CWC22 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03015 mRNA surveillance pathway 5
gma03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 8
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106403096 106430744 106429700 103832444 103853206 103831421 844433 107910275 107887045 102629709 100814050 100788669 100246500 7460377 25490373 101263922 101256753 102587492 102602792 107808396 107761431 107797498 4351904 103640938 123072134 123063227 123445327 8054964 100840252 5722057
The preparation time of this page was 1.3 [sec].