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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G48630   Cyclin family protein 
 ath-u.5   AT5G48640   Cyclin family protein 
 gma-u.5   100816019   cyclin-C1-2 
 gma-u.5   100784345   cyclin-C1-2 
 vvi-u.5   100245896   cyclin-C1-2 
 ppo-u.5   7464420   cyclin-C1-2 
 ppo-u.5   7471166   cyclin-C1-2 
 mtr-u.5   11435941   cyclin-C1-2 
 sly-u.5   101252599   cyclin-C1-2 
 osa-u.5   9272663   cyclin-C1-1-like 
 zma-u.5   100193909   uncharacterized LOC100193909 

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Top 50 coexpressed genes to AT5G48630 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G48630 (ath-u.5 coexpression data)

CoexMap"106403272"


bnaLOC106403272 | Entrez gene ID : 106403272    
Species ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 2 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (509 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (98 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity  (183 genes)  IEA  
Protein XP_013699575.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  chlo 1,  mito 1,  E.R. 1,  chlo_mito 1  (predict for XP_013699575.1)
Subcellular
localization
TargetP
other 9  (predict for XP_013699575.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AT5G48630

.
ath-u.5
for
AT5G48640

.
gma-u.5
for
100816019

.
gma-u.5
for
100784345

.
vvi-u.5
for
100245896

.
ppo-u.5
for
7464420

.
ppo-u.5
for
7471166

.
mtr-u.5
for
11435941

.
sly-u.5
for
101252599

.
osa-u.5
for
9272663

.
zma-u.5
for
100193909

.


Ortholog ID: 4800
Species ath ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol AT5G48630 AT5G48640 LOC100816019 LOC100784345 LOC101252599 LOC9272663 LOC100193909 LOC103874972 LOC103854550 LOC100245896 LOC7471166 LOC7464420 LOC11435941 LOC123104285 LOC123112545 LOC123399710 LOC123406332 LOC121232163 LOC107912546 LOC106348913 LOC106382484 CHLRE_03g174476v5 LOC8054773 LOC102592474 LOC102625453 LOC100839042 LOC100821206 LOC107799575 LOC107785372
Function* Cyclin family protein Cyclin family protein cyclin-C1-2 cyclin-C1-2 cyclin-C1-2 cyclin-C1-1-like uncharacterized LOC100193909 cyclin-C1-1 cyclin-C1-2 cyclin-C1-2 cyclin-C1-2 cyclin-C1-2 cyclin-C1-2 cyclin-C1-1 cyclin-C1-1 cyclin-C1-1-like cyclin-C1-1 cyclin-C1-2 cyclin-C1-2 cyclin-C1-1 cyclin-C1-1 uncharacterized protein cyclin-C1-1 cyclin-C1-2-like cyclin-C1-2-like cyclin-C1-1 cyclin-C1-1 cyclin-C1-2-like cyclin-C1-2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00600 Sphingolipid metabolism 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi00760 Nicotinate and nicotinamide metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
bna03008 Ribosome biogenesis in eukaryotes 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04130 SNARE interactions in vesicular transport 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04136 Autophagy - other 4
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04136 Autophagy - other 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi00190 Oxidative phosphorylation 2
bdi04145 Phagosome 2
bdi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 3
bdi04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03250 Viral life cycle - HIV-1 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834920 834921 100816019 100784345 101252599 9272663 100193909 103874972 103854550 100245896 7471166 7464420 11435941 123104285 123112545 123399710 123406332 121232163 107912546 106348913 106382484 5728879 8054773 102592474 102625453 100839042 100821206 107799575 107785372
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