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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125574923   uncharacterized LOC125574923 
 bna-r.1   125601713   uncharacterized LOC125601713 
 bra-r.6   103855032   uncharacterized LOC103855032 
 ath-u.5   AT3G28956   RNA polymerase II, Rpb4, core protein 
 ath-u.5   AT5G62950   RNA polymerase II, Rpb4, core protein 
 ghi-r.1   107927637   DNA-directed RNA polymerase III subunit RPC9 
 ghi-r.1   107941606   DNA-directed RNA polymerase III subunit RPC9 
 cit-r.1   102623208   uncharacterized LOC102623208 
 vvi-u.5   100259966   uncharacterized LOC100259966 
 ppo-u.5   7466866   uncharacterized LOC7466866 
 mtr-u.5   25496379   uncharacterized LOC25496379 
 mtr-u.5   120575910   DNA-directed RNA polymerase III subunit RPC9 
 mtr-u.5   120575911   DNA-directed RNA polymerase III subunit RPC9 
 sly-u.5   101258513   uncharacterized LOC101258513 
 sot-r.1   102587541   uncharacterized LOC102587541 
 nta-r.1   107812661   uncharacterized LOC107812661 
 nta-r.1   107817299   uncharacterized LOC107817299 
 osa-u.5   4352240   uncharacterized LOC4352240 
 zma-u.5   109943977   DNA-directed RNA polymerase III subunit RPC9-like 
 zma-u.5   109943978   uncharacterized LOC109943978 
 zma-u.5   109939175   uncharacterized LOC109939175 
 tae-r.2   123041851   uncharacterized LOC123041851 
 tae-r.2   123185900   uncharacterized LOC123185900 
 hvu-r.1   123430709   uncharacterized LOC123430709 
 sbi-r.1   8063274   uncharacterized LOC8063274 
 bdi-r.1   100837108   uncharacterized LOC100837108 
 cre-r.1   CHLRE_13g564550v5   uncharacterized protein 

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Top 50 coexpressed genes to 125574923 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125574923 (bna-r.1 coexpression data)

CoexMap"106406161"


bnaLOC106406161 | Entrez gene ID : 106406161    
Species bna bra ath ghi cit vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre gma
Paralog 2 1 2 2 1 1 1 3 1 1 2 1 3 2 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006384 [list] [network] transcription initiation at RNA polymerase III promoter  (27 genes)  IEA  
GO CC
GO:0005666 [list] [network] RNA polymerase III complex  (74 genes)  IEA  
GO MF
GO:0000166 [list] [network] nucleotide binding  (8037 genes)  IEA  
Protein XP_013702221.1 [sequence] [blastp]
XP_048617101.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 2,  cyto_plas 2,  nucl 1,  chlo_mito 1  (predict for XP_013702221.1)
chlo 6,  plas 2,  nucl 1  (predict for XP_048617101.1)
Subcellular
localization
TargetP
other 6  (predict for XP_013702221.1)
other 4,  scret 3  (predict for XP_048617101.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125574923
bna-r.1
for
125601713
bra-r.6
for
103855032
ath-u.5
for
AT3G28956
ath-u.5
for
AT5G62950
ghi-r.1
for
107927637
ghi-r.1
for
107941606
cit-r.1
for
102623208
vvi-u.5
for
100259966
ppo-u.5
for
7466866
mtr-u.5
for
25496379
mtr-u.5
for
120575910
mtr-u.5
for
120575911
sly-u.5
for
101258513
sot-r.1
for
102587541
nta-r.1
for
107812661
nta-r.1
for
107817299
osa-u.5
for
4352240
zma-u.5
for
109943977
zma-u.5
for
109943978
zma-u.5
for
109939175
tae-r.2
for
123041851
tae-r.2
for
123185900
hvu-r.1
for
123430709
sbi-r.1
for
8063274
bdi-r.1
for
100837108
cre-r.1
for
CHLRE_13g564550v5


Ortholog ID: 3938
Species bna bra ath ath ghi ghi cit vvi ppo mtr mtr mtr sly sot nta nta osa zma zma zma tae tae hvu sbi bdi cre
Symbol LOC125574923 LOC103855032 AT3G28956 AT5G62950 LOC107927637 LOC107941606 LOC102623208 LOC100259966 LOC7466866 LOC25496379 LOC25496377 LOC120576153 LOC101258513 LOC102587541 LOC107812661 LOC107817299 LOC4352240 LOC109943977 LOC109943978 LOC100280798 LOC123041851 LOC123049813 LOC123430709 LOC8063274 LOC100837108 CHLRE_13g564550v5
Function* uncharacterized LOC125574923 uncharacterized LOC103855032 RNA polymerase II, Rpb4, core protein RNA polymerase II, Rpb4, core protein DNA-directed RNA polymerase III subunit RPC9 DNA-directed RNA polymerase III subunit RPC9 uncharacterized LOC102623208 uncharacterized LOC100259966 uncharacterized LOC7466866 uncharacterized LOC25496379 DNA-directed RNA polymerase III subunit RPC9 DNA-directed RNA polymerase III subunit RPC9 uncharacterized LOC101258513 uncharacterized LOC102587541 uncharacterized LOC107812661 uncharacterized LOC107817299 uncharacterized LOC4352240 DNA-directed RNA polymerase III subunit RPC9-like uncharacterized LOC109943978 uncharacterized LOC100280798 uncharacterized LOC123041851 uncharacterized LOC123049813 uncharacterized LOC123430709 uncharacterized LOC8063274 uncharacterized LOC100837108 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 3
ath04144 Endocytosis 2
ath00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath03008 Ribosome biogenesis in eukaryotes 2
ath03083 Polycomb repressive complex 2
ath04712 Circadian rhythm - plant 2
ath04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 13
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03018 RNA degradation 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03018 RNA degradation 2
nta03020 RNA polymerase 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125574923 103855032 822534 836415 107927637 107941606 102623208 100259966 7466866 25496379 25496377 120576153 101258513 102587541 107812661 107817299 4352240 109943977 109943978 100280798 123041851 123049813 123430709 8063274 100837108 5719024
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