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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106406465   transcription elongation factor SPT6 homolog 
 ath-u.5   AT1G63210   Transcription elongation factor Spt6 
 ath-u.5   GTB1   global transcription factor group B1 
 gma-u.5   100809136   transcription elongation factor SPT6 homolog 
 gma-u.5   100808591   transcription elongation factor SPT6 homolog 
 gma-u.5   100804204   transcription elongation factor SPT6-like 
 vvi-u.5   100241331   transcription elongation factor SPT6 homolog 
 ppo-u.5   7455790   transcription elongation factor SPT6 homolog 
 ppo-u.5   7464055   transcription elongation factor SPT6 homolog 
 ppo-u.5   7479639   transcription elongation factor SPT6 homolog 
 mtr-u.5   11433787   transcription elongation factor SPT6 homolog 
 mtr-u.5   11426983   transcription elongation factor SPT6 homolog 
 mtr-u.5   112420383   transcription elongation factor SPT6 homolog 
 sly-u.5   101250941   transcription elongation factor SPT6 homolog 
 osa-u.5   9270554   transcription elongation factor SPT6 homolog 
 zma-u.5   103630545   transcription elongation factor SPT6 homolog 

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Top 50 coexpressed genes to 106406465 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106406465 (bna-r.1 coexpression data)

CoexMap"106406465"


bnaLOC106406465 | Entrez gene ID : 106406465    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 2 3 1 3 3 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042789 [list] [network] mRNA transcription by RNA polymerase II  (4 genes)  IEA  
GO:0140673 [list] [network] transcription elongation-coupled chromatin remodeling  (13 genes)  IEA  
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (46 genes)  IEA  
GO:0032968 [list] [network] positive regulation of transcription elongation by RNA polymerase II  (88 genes)  IEA  
GO:0034728 [list] [network] nucleosome organization  (151 genes)  IEA  
GO CC
GO:0008023 [list] [network] transcription elongation factor complex  (79 genes)  IEA  
GO MF
GO:0031491 [list] [network] nucleosome binding  (74 genes)  IEA  
GO:0042393 [list] [network] histone binding  (165 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (12766 genes)  IEA  
Protein XP_013702592.2 [sequence] [blastp]
XP_013702594.2 [sequence] [blastp]
XP_022543141.2 [sequence] [blastp]
XP_022543142.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for XP_013702592.2)
nucl 9,  cyto_nucl 5  (predict for XP_013702594.2)
nucl 9,  cyto_nucl 5  (predict for XP_022543141.2)
nucl 9,  cyto_nucl 5  (predict for XP_022543142.2)
Subcellular
localization
TargetP
other 8  (predict for XP_013702592.2)
other 8  (predict for XP_013702594.2)
other 9  (predict for XP_022543141.2)
other 9  (predict for XP_022543142.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106406465

.
ath-u.5
for
AT1G63210

.
ath-u.5
for
GTB1

.
gma-u.5
for
100809136

.
gma-u.5
for
100808591

.
gma-u.5
for
100804204

.
vvi-u.5
for
100241331

.
ppo-u.5
for
7455790

.
ppo-u.5
for
7464055

.
ppo-u.5
for
7479639

.
mtr-u.5
for
11433787

.
mtr-u.5
for
11426983

.
mtr-u.5
for
112420383

.
sly-u.5
for
101250941

.
osa-u.5
for
9270554

.
zma-u.5
for
103630545

.


Ortholog ID: 4648
Species ath ath gma gma sly osa zma bra bra ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol GTB1 AT1G63210 LOC100804204 LOC100808591 LOC101250941 LOC9270554 LOC103630545 LOC103831054 LOC103852235 LOC7455790 LOC7479639 LOC112420383 LOC11433787 LOC123060835 LOC123182461 LOC123443934 LOC121229690 LOC107955350 LOC106409019 LOC106406465 CHLRE_09g403182v5 LOC8077045 LOC102584212 LOC102621404 LOC100823557 LOC104581694 LOC142181215 LOC107791867
Function* global transcription factor group B1 Transcription elongation factor Spt6 transcription elongation factor SPT6-like transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6-like transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog transcription elongation factor SPT6 homolog uncharacterized protein transcription elongation factor SPT6-like transcription elongation factor SPT6 transcription elongation factor SPT6 homolog transcription elongation factor SPT6-like transcription elongation factor SPT6 homolog transcription elongation factor SPT6-like transcription elongation factor SPT6 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath03250 Viral life cycle - HIV-1 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 2
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 5
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma03040 Spliceosome 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03040 Spliceosome 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu03040 Spliceosome 2
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 3
sot03040 Spliceosome 2
sot03082 ATP-dependent chromatin remodeling 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842855 842626 100804204 100808591 101250941 9270554 103630545 103831054 103852235 7455790 7479639 112420383 11433787 123060835 123182461 123443934 121229690 107955350 106409019 106406465 5723196 8077045 102584212 102621404 100823557 104581694 142181215 107791867
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