ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	111197883	scarecrow-like transcription factor PAT1
bna-r.1	106369310	scarecrow-like protein 5
bna-r.1	106429015	scarecrow-like transcription factor PAT1
bra-r.6	103871334	scarecrow-like protein 5
bra-r.6	103868300	scarecrow-like protein 13
bra-r.6	PAT1	scarecrow-like transcription factor PAT1
ath-u.5	SCL21	SCARECROW-like 21
ath-u.5	SCL13	SCARECROW-like 13
ath-u.5	PAT1	GRAS family transcription factor
ghi-r.1	107905692	scarecrow-like protein 13
ghi-r.1	107907401	scarecrow-like protein 13
ghi-r.1	107912605	scarecrow-like transcription factor PAT1
cit-r.1	102621664	scarecrow-like transcription factor PAT1
cit-r.1	102612934	scarecrow-like protein 21
cit-r.1	102620670	scarecrow-like protein 13
gma-u.5	100776109	scarecrow-like protein 13
gma-u.5	100792931	scarecrow-like protein 13-like
gma-u.5	100808300	scarecrow-like transcription factor PAT1
vvi-u.5	100261403	scarecrow-like transcription factor PAT1
vvi-u.5	100250258	scarecrow-like protein 21
vvi-u.5	100245041	scarecrow-like protein 21
ppo-u.5	7455815	scarecrow-like protein 13
ppo-u.5	7463692	scarecrow-like protein 13
ppo-u.5	7468554	scarecrow-like transcription factor PAT1
mtr-u.5	11418702	scarecrow-like transcription factor PAT1
mtr-u.5	11439575	scarecrow-like protein 13
sly-u.5	101252411	scarecrow-like transcription factor PAT1
sly-u.5	101253917	scarecrow-like protein 21
sly-u.5	101247427	scarecrow-like protein 13
sot-r.1	102591653	scarecrow-like protein 21
sot-r.1	102602706	scarecrow-like protein 21
sot-r.1	102596292	scarecrow-like transcription factor PAT1
nta-r.1	107774099	scarecrow-like protein 13
nta-r.1	107782037	scarecrow-like transcription factor PAT1
nta-r.1	107784123	scarecrow-like protein 13
osa-u.5	4343735	chitin-inducible gibberellin-responsive protein 2-like
osa-u.5	4348466	scarecrow-like transcription factor PAT1
osa-u.5	4331920	scarecrow-like protein 21
zma-u.5	100502252	uncharacterized LOC100502252
zma-u.5	100384069	uncharacterized LOC100384069
zma-u.5	100281447	uncharacterized LOC100281447
tae-r.2	123044417	chitin-inducible gibberellin-responsive protein 2
tae-r.2	123052274	chitin-inducible gibberellin-responsive protein 2
tae-r.2	123093152	scarecrow-like protein 21
hvu-r.1	123452466	scarecrow-like protein 21
hvu-r.1	123425543	chitin-inducible gibberellin-responsive protein 2-like
hvu-r.1	123449451	scarecrow-like protein 21
sbi-r.1	8054264	scarecrow-like protein 21
sbi-r.1	8058364	chitin-inducible gibberellin-responsive protein 2
bdi-r.1	100837965	chitin-inducible gibberellin-responsive protein 2
bdi-r.1	100831355	scarecrow-like protein 21

Top 50 coexpressed genes to 111197883 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 111197883 (bna-r.1 coexpression data)

CoexMap"106406911"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(5322 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(9971 genes)

IEA

GO MF

GO:0043565 [list] [network] sequence-specific DNA binding	(2444 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(3791 genes)	IEA

Protein

XP_013703111.1 [sequence] [blastp]
XP_048619470.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, cysk 4, chlo 1	(predict for XP_013703111.1)
cyto 4, nucl 3, chlo 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for XP_048619470.1)

Subcellular
localization
TargetP

other 9	(predict for XP_013703111.1)
other 9, mito 3	(predict for XP_048619470.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 111197883	bna-r.1 for 106369310	bna-r.1 for 106429015	bra-r.6 for 103871334	bra-r.6 for 103868300	bra-r.6 for PAT1	ath-u.5 for SCL21	ath-u.5 for SCL13	ath-u.5 for PAT1	ghi-r.1 for 107905692	ghi-r.1 for 107907401	ghi-r.1 for 107912605	cit-r.1 for 102621664	cit-r.1 for 102612934	cit-r.1 for 102620670	gma-u.5 for 100776109	gma-u.5 for 100792931	gma-u.5 for 100808300	vvi-u.5 for 100261403	vvi-u.5 for 100250258	vvi-u.5 for 100245041	ppo-u.5 for 7455815	ppo-u.5 for 7463692	ppo-u.5 for 7468554	mtr-u.5 for 11418702	mtr-u.5 for 11439575	sly-u.5 for 101252411	sly-u.5 for 101253917	sly-u.5 for 101247427	sot-r.1 for 102591653	sot-r.1 for 102602706	sot-r.1 for 102596292	nta-r.1 for 107774099	nta-r.1 for 107782037	nta-r.1 for 107784123	osa-u.5 for 4343735	osa-u.5 for 4348466	osa-u.5 for 4331920	zma-u.5 for 100502252	zma-u.5 for 100384069	zma-u.5 for 100281447	tae-r.2 for 123044417	tae-r.2 for 123052274	tae-r.2 for 123093152	hvu-r.1 for 123452466	hvu-r.1 for 123425543	hvu-r.1 for 123449451	sbi-r.1 for 8054264	sbi-r.1 for 8058364	bdi-r.1 for 100837965	bdi-r.1 for 100831355

Ortholog

Ortholog ID: 912

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SCL13

PAT1

SCL5

Function^*

scarecrow-like protein 5