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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106347139   phosphoenolpyruvate carboxylase 4-like 
 bna-r.1   106401322   phosphoenolpyruvate carboxylase 4-like 
 bra-r.6   103840598   phosphoenolpyruvate carboxylase 4 
 ghi-r.1   107946467   phosphoenolpyruvate carboxylase 4 
 ghi-r.1   107934792   phosphoenolpyruvate carboxylase 4 
 cit-r.1   102616036   phosphoenolpyruvate carboxylase 4 
 gma-u.5   PEPC17   phosphoenolpyruvate carboxylase 
 gma-u.5   100785020   phosphoenolpyruvate carboxylase 4 
 vvi-u.5   100247335   phosphoenolpyruvate carboxylase 4 
 ppo-u.5   7489379   phosphoenolpyruvate carboxylase 4 
 ppo-u.5   7485946   phosphoenolpyruvate carboxylase 4 
 mtr-u.5   11405385   phosphoenolpyruvate carboxylase 4 
 mtr-u.5   25479382   phosphoenolpyruvate carboxylase 4 
 sly-u.5   PEPC1   phosphoenolpyruvate carboxylase 
 sot-r.1   102586589   phosphoenolpyruvate carboxylase 4 
 nta-r.1   107807412   phosphoenolpyruvate carboxylase 4 
 nta-r.1   107759530   phosphoenolpyruvate carboxylase 4-like 
 osa-u.5   4326138   phosphoenolpyruvate carboxylase 4 
 zma-u.5   103649899   phosphoenolpyruvate carboxylase 4 
 cre-r.1   CHLRE_03g171950v5   uncharacterized protein 

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Top 50 coexpressed genes to 106347139 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106347139 (bna-r.1 coexpression data)

CoexMap"106409956"


bnaLOC106409956 | Entrez gene ID : 106409956    
Species bna bra ghi cit gma vvi ppo mtr sly sot nta osa zma cre sbi ath tae hvu bdi
Paralog 2 1 2 1 2 1 2 2 1 1 2 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00620 [list] [network] Pyruvate metabolism (300 genes)
bna00710 [list] [network] Carbon fixation by Calvin cycle (246 genes)
bna01200 [list] [network] Carbon metabolism (888 genes)
GO BP
GO:0015977 [list] [network] carbon fixation  (18 genes)  IEA  
GO:0006099 [list] [network] tricarboxylic acid cycle  (166 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (3196 genes)  IEA  
GO MF
GO:0008964 [list] [network] phosphoenolpyruvate carboxylase activity  (17 genes)  IEA  
Protein XP_022560943.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  chlo 1,  golg 1  (predict for XP_022560943.1)
Subcellular
localization
TargetP
other 8  (predict for XP_022560943.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106347139
bna-r.1
for
106401322
bra-r.6
for
103840598
ghi-r.1
for
107946467
ghi-r.1
for
107934792
cit-r.1
for
102616036
gma-u.5
for
PEPC17
gma-u.5
for
100785020
vvi-u.5
for
100247335
ppo-u.5
for
7489379
ppo-u.5
for
7485946
mtr-u.5
for
11405385
mtr-u.5
for
25479382
sly-u.5
for
PEPC1
sot-r.1
for
102586589
nta-r.1
for
107807412
nta-r.1
for
107759530
osa-u.5
for
4326138
zma-u.5
for
103649899
cre-r.1
for
CHLRE_03g171950v5


Ortholog ID: 8300
Species bna bna bra ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma cre
Symbol LOC106347139 LOC106401322 LOC103840598 LOC107946467 LOC107934792 LOC102616036 PEPC17 LOC100785020 LOC100247335 LOC7489379 LOC7485946 LOC11405385 LOC25479382 PEPC1 LOC102586589 LOC107807412 LOC107759530 LOC4326138 LOC103649899 CHLRE_03g171950v5
Function* phosphoenolpyruvate carboxylase 4-like phosphoenolpyruvate carboxylase 4-like phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4-like phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 3
bna00710 Carbon fixation by Calvin cycle 3
bna01200 Carbon metabolism 3
bna00630 Glyoxylate and dicarboxylate metabolism 3
bna00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 3
bna00710 Carbon fixation by Calvin cycle 3
bna01200 Carbon metabolism 3
bna00630 Glyoxylate and dicarboxylate metabolism 3
bna00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 6
ghi00500 Starch and sucrose metabolism 6
ghi00710 Carbon fixation by Calvin cycle 5
ghi01200 Carbon metabolism 5
ghi00052 Galactose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 6
ghi00500 Starch and sucrose metabolism 6
ghi00710 Carbon fixation by Calvin cycle 5
ghi01200 Carbon metabolism 5
ghi00052 Galactose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 4
gma00710 Carbon fixation by Calvin cycle 4
gma01200 Carbon metabolism 4
gma00620 Pyruvate metabolism 3
gma00053 Ascorbate and aldarate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 2
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00910 Nitrogen metabolism 4
ppo01200 Carbon metabolism 4
ppo01310 Nitrogen cycle 3
ppo00195 Photosynthesis 3
ppo00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00561 Glycerolipid metabolism 2
mtr00566 Sulfoquinovose metabolism 2
mtr00620 Pyruvate metabolism 2
mtr00710 Carbon fixation by Calvin cycle 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00561 Glycerolipid metabolism 2
mtr00566 Sulfoquinovose metabolism 2
mtr00620 Pyruvate metabolism 2
mtr00710 Carbon fixation by Calvin cycle 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 7
sly00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 4
sot00561 Glycerolipid metabolism 3
sot00566 Sulfoquinovose metabolism 3
sot00620 Pyruvate metabolism 3
sot00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 4
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 4
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00220 Arginine biosynthesis 4
cre00250 Alanine, aspartate and glutamate metabolism 3
cre01230 Biosynthesis of amino acids 3
cre01240 Biosynthesis of cofactors 3
cre00620 Pyruvate metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106347139 106401322 103840598 107946467 107934792 102616036 547755 100785020 100247335 7489379 7485946 11405385 25479382 101245149 102586589 107807412 107759530 4326138 103649899 66052840
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