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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   IBM1   Transcription factor jumonji (jmjC) domain-containing protein 
 ath-u.5   B160   protein B160 
 ath-u.5   AT4G00990   Transcription factor jumonji (jmjC) domain-containing protein 
 gma-u.5   100787798   lysine-specific demethylase JMJ25 
 gma-u.5   100780803   putative JmjC domain-containing histone demethylase 
 gma-u.5   100805723   lysine-specific demethylase JMJ25 
 vvi-u.5   100250303   lysine-specific demethylase JMJ26 
 vvi-u.5   100258626   lysine-specific demethylase JMJ27 
 ppo-u.5   112323367   lysine-specific demethylase JMJ26 
 ppo-u.5   7486369   lysine-specific demethylase JMJ25 
 ppo-u.5   18097336   lysine-specific demethylase JMJ26 
 mtr-u.5   11431621   lysine-specific demethylase JMJ25 
 mtr-u.5   11429788   uncharacterized LOC11429788 
 mtr-u.5   11433685   lysine-specific demethylase JMJ25 
 sly-u.5   101266484   lysine-specific demethylase JMJ28 
 sly-u.5   101265193   lysine-specific demethylase JMJ26 
 sly-u.5   101254269   lysine-specific demethylase JMJ26 
 osa-u.5   4328036   lysine-specific demethylase JMJ27 
 osa-u.5   4331234   lysine-specific demethylase JMJ27 
 osa-u.5   4333174   lysine-specific demethylase JMJ27 
 zma-u.5   103643664   Transcription factor jumonji (jmjC) domain-containing protein 
 zma-u.5   100280238   putative jumonji-like transcription factor family protein 
 zma-u.5   103654986   putative jumonji-like transcription factor family protein 

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Top 50 coexpressed genes to IBM1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to IBM1 (ath-u.5 coexpression data)

CoexMap"106411882"


bnaLOC106411882 | Entrez gene ID : 106411882    
Species ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 3 2 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1371 genes)  IEA  
GO CC
GO:0000118 [list] [network] histone deacetylase complex  (99 genes)  IEA  
GO:0000785 [list] [network] chromatin  (564 genes)  IEA  
GO MF
GO:0032454 [list] [network] histone H3K9 demethylase activity  (20 genes)  IEA  
GO:0031490 [list] [network] chromatin DNA binding  (130 genes)  IEA  
GO:0003712 [list] [network] transcription coregulator activity  (379 genes)  IEA  
Protein XP_013708187.1 [sequence] [blastp]
XP_013708188.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  cyto_nucl 4,  nucl 3,  cyto 1,  cyto_mito 1,  mito_plas 1  (predict for XP_013708187.1)
cyto_nucl 4,  nucl 3,  cyto 3,  cysk_nucl 2,  mito 2  (predict for XP_013708188.1)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for XP_013708187.1)
other 6,  mito 3  (predict for XP_013708188.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
IBM1

.
ath-u.5
for
B160

.
ath-u.5
for
AT4G00990

.
gma-u.5
for
100787798

.
gma-u.5
for
100780803

.
gma-u.5
for
100805723

.
vvi-u.5
for
100250303

.
vvi-u.5
for
100258626

.
ppo-u.5
for
112323367

.
ppo-u.5
for
7486369

.
ppo-u.5
for
18097336

.
mtr-u.5
for
11431621

.
mtr-u.5
for
11429788

.
mtr-u.5
for
11433685

.
sly-u.5
for
101266484

.
sly-u.5
for
101265193

.
sly-u.5
for
101254269

.
osa-u.5
for
4328036

.
osa-u.5
for
4331234

.
osa-u.5
for
4333174

.
zma-u.5
for
103643664

.
zma-u.5
for
100280238

.
zma-u.5
for
103654986

.


Ortholog ID: 405
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol AT4G00990 AT1G62310 LOC100799234 LOC112997634 LOC101265193 LOC101266484 LOC4346966 LOC103643664 LOC103654986 LOC103836196 LOC103859003 LOC100247074 LOC100258626 LOC7496997 LOC112323367 LOC11444490 LOC11445522 LOC123135497 LOC123395900 LOC107920142 LOC107886373 LOC106384149 LOC106365732 CHLRE_10g446850v5 LOC8064531 LOC102602507 LOC102618372 LOC102608274 LOC100822574 LOC107807497 LOC107760914
Function* Transcription factor jumonji (jmjC) domain-containing protein transcription factor jumonji (jmjC) domain-containing protein lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ26 lysine-specific demethylase JMJ28 lysine-specific demethylase JMJ26 Transcription factor jumonji (jmjC) domain-containing protein putative jumonji-like transcription factor family protein lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 uncharacterized LOC100247074 lysine-specific demethylase JMJ27 lysine-specific demethylase JMJ28 lysine-specific demethylase JMJ26 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ25 uncharacterized protein lysine-specific demethylase JMJ25 uncharacterized LOC102602507 lysine-specific demethylase JMJ26 lysine-specific demethylase JMJ28 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ29-like lysine-specific demethylase JMJ29
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 5
zma00270 Cysteine and methionine metabolism 2
zma00620 Pyruvate metabolism 2
zma00030 Pentose phosphate pathway 2
zma00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03082 ATP-dependent chromatin remodeling 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 4
bra04148 Efferocytosis 4
bra04145 Phagosome 3
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00250 Alanine, aspartate and glutamate metabolism 3
mtr01230 Biosynthesis of amino acids 3
mtr00910 Nitrogen metabolism 3
mtr00195 Photosynthesis 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 3
ghi00061 Fatty acid biosynthesis 3
ghi01040 Biosynthesis of unsaturated fatty acids 3
ghi01212 Fatty acid metabolism 3
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 4
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
sbi04814 Motor proteins 2
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 3
cit00620 Pyruvate metabolism 2
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
bdi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827933 842529 100799234 112997634 101265193 101266484 4346966 103643664 103654986 103836196 103859003 100247074 100258626 7496997 112323367 11444490 11445522 123135497 123395900 107920142 107886373 106384149 106365732 5723853 8064531 102602507 102618372 102608274 100822574 107807497 107760914
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