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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106412548   glyceraldehyde-3-phosphate dehydrogenase GAPA2, chloroplastic 
 ath-u.5   GAPB   glyceraldehyde-3-phosphate dehydrogenase B subunit 
 ath-u.5   GAPA-2   glyceraldehyde 3-phosphate dehydrogenase A subunit 2 
 ath-u.5   GAPA   glyceraldehyde 3-phosphate dehydrogenase A subunit 
 gma-u.5   100815649   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 gma-u.5   732655   glyceraldehyde-3-phosphate dehydrogenase A subunit 
 gma-u.5   732571   glyceraldehyde-3-phosphate dehydrogenase B subunit 
 vvi-u.5   100259814   glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 
 vvi-u.5   100246378   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 ppo-u.5   7494712   glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 
 ppo-u.5   7474559   glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic 
 mtr-u.5   11428156   glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 
 mtr-u.5   11437530   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 sly-u.5   101266713   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 sly-u.5   101264004   glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 
 sly-u.5   101253541   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic-like 
 osa-u.5   4336044   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 osa-u.5   4331495   glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 
 zma-u.5   542290   glyceraldehyde phosphate dehydrogenase B1 
 zma-u.5   103641723   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 
 zma-u.5   103642790   glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 

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Top 50 coexpressed genes to 106412548 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106412548 (bna-r.1 coexpression data)

CoexMap"106412548"


bnaLOC106412548 | Entrez gene ID : 106412548    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 3 3 2 2 2 3 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00710 [list] [network] Carbon fixation by Calvin cycle (246 genes)
bna01200 [list] [network] Carbon metabolism (888 genes)
GO BP
GO:0006006 [list] [network] glucose metabolic process  (128 genes)  IEA  
GO CC
GO:0048046 [list] [network] apoplast  (182 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (1821 genes)  IEA  
GO MF
GO:0004365 [list] [network] glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity  (9 genes)  IEA  
GO:0050661 [list] [network] NADP binding  (177 genes)  IEA  
GO:0051287 [list] [network] NAD binding  (240 genes)  IEA  
Protein XP_013708910.2 [sequence] [blastp]
XP_013708911.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 4  (predict for XP_013708910.2)
chlo 5,  vacu 3,  nucl 1,  E.R. 1,  golg 1  (predict for XP_013708911.2)
Subcellular
localization
TargetP
chlo 7  (predict for XP_013708910.2)
chlo 3  (predict for XP_013708911.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106412548
ath-u.5
for
GAPB
ath-u.5
for
GAPA-2
ath-u.5
for
GAPA
gma-u.5
for
100815649
gma-u.5
for
732655
gma-u.5
for
732571
vvi-u.5
for
100259814
vvi-u.5
for
100246378
ppo-u.5
for
7494712
ppo-u.5
for
7474559
mtr-u.5
for
11428156
mtr-u.5
for
11437530
sly-u.5
for
101266713
sly-u.5
for
101264004
sly-u.5
for
101253541
osa-u.5
for
4336044
osa-u.5
for
4331495
zma-u.5
for
542290
zma-u.5
for
103641723
zma-u.5
for
103642790


Ortholog ID: 1864
Species bna bna bra bra ath ath ghi ghi cit cit gma gma vvi vvi ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC106412548 LOC106349325 LOC103843097 LOC103875281 GAPA GAPB LOC107922459 LOC107935841 LOC102626680 LOC102614495 LOC100815649 LOC100806482 LOC100246378 LOC100259814 LOC7494712 LOC11428156 LOC11437530 LOC101266713 LOC101264004 LOC102587206 LOC102606161 LOC107767301 LOC107780142 LOC4336044 LOC4331495 LOC109943118 LOC542290 LOC123045658 LOC123093580 LOC123426905 LOC123449789 LOC110431784 LOC110436299 LOC100829538 LOC100846055 CHLRE_01g010900v5
Function* glyceraldehyde-3-phosphate dehydrogenase GAPA2, chloroplastic glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic glyceraldehyde-3-phosphate dehydrogenase GAPA2, chloroplastic glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic glyceraldehyde 3-phosphate dehydrogenase A subunit glyceraldehyde-3-phosphate dehydrogenase B subunit glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde phosphate dehydrogenase B1 glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 8
bna00710 Carbon fixation by Calvin cycle 6
bna00260 Glycine, serine and threonine metabolism 2
bna00270 Cysteine and methionine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 3
bna01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 6
bra00710 Carbon fixation by Calvin cycle 5
bra01230 Biosynthesis of amino acids 3
bra00195 Photosynthesis 2
bra00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 5
bra00710 Carbon fixation by Calvin cycle 4
bra00195 Photosynthesis 3
bra01230 Biosynthesis of amino acids 3
bra00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 9
ath00710 Carbon fixation by Calvin cycle 8
ath00195 Photosynthesis 6
ath00010 Glycolysis / Gluconeogenesis 3
ath00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 14
ath00710 Carbon fixation by Calvin cycle 10
ath00630 Glyoxylate and dicarboxylate metabolism 6
ath00260 Glycine, serine and threonine metabolism 4
ath00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi00710 Carbon fixation by Calvin cycle 6
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 8
cit01200 Carbon metabolism 4
cit00196 Photosynthesis - antenna proteins 3
cit00710 Carbon fixation by Calvin cycle 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 8
cit00630 Glyoxylate and dicarboxylate metabolism 4
cit01200 Carbon metabolism 4
cit00196 Photosynthesis - antenna proteins 2
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 13
gma01200 Carbon metabolism 13
gma00030 Pentose phosphate pathway 4
gma00630 Glyoxylate and dicarboxylate metabolism 3
gma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 11
gma01200 Carbon metabolism 11
gma00030 Pentose phosphate pathway 4
gma00010 Glycolysis / Gluconeogenesis 3
gma00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 12
vvi00710 Carbon fixation by Calvin cycle 10
vvi00630 Glyoxylate and dicarboxylate metabolism 4
vvi01230 Biosynthesis of amino acids 4
vvi00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 11
vvi00710 Carbon fixation by Calvin cycle 10
vvi00010 Glycolysis / Gluconeogenesis 4
vvi00195 Photosynthesis 3
vvi00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 10
ppo00710 Carbon fixation by Calvin cycle 7
ppo00010 Glycolysis / Gluconeogenesis 4
ppo01230 Biosynthesis of amino acids 3
ppo00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
mtr00195 Photosynthesis 5
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 6
mtr00710 Carbon fixation by Calvin cycle 5
mtr00195 Photosynthesis 5
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 12
sly00710 Carbon fixation by Calvin cycle 10
sly00630 Glyoxylate and dicarboxylate metabolism 4
sly00030 Pentose phosphate pathway 4
sly00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 12
sly00710 Carbon fixation by Calvin cycle 10
sly00195 Photosynthesis 4
sly00030 Pentose phosphate pathway 4
sly01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 8
sot00710 Carbon fixation by Calvin cycle 7
sot00195 Photosynthesis 6
sot00630 Glyoxylate and dicarboxylate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00710 Carbon fixation by Calvin cycle 5
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 12
nta01200 Carbon metabolism 11
nta00260 Glycine, serine and threonine metabolism 8
nta00710 Carbon fixation by Calvin cycle 7
nta00220 Arginine biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 10
nta01200 Carbon metabolism 10
nta00630 Glyoxylate and dicarboxylate metabolism 8
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 8
osa00710 Carbon fixation by Calvin cycle 7
osa00195 Photosynthesis 7
osa00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 10
osa00710 Carbon fixation by Calvin cycle 8
osa00195 Photosynthesis 5
osa00630 Glyoxylate and dicarboxylate metabolism 4
osa00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 7
zma01200 Carbon metabolism 7
zma00195 Photosynthesis 5
zma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 8
zma00710 Carbon fixation by Calvin cycle 7
zma01200 Carbon metabolism 7
zma00195 Photosynthesis 3
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 11
tae01200 Carbon metabolism 11
tae00195 Photosynthesis 6
tae00630 Glyoxylate and dicarboxylate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 9
tae01200 Carbon metabolism 9
tae00480 Glutathione metabolism 2
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 9
hvu00710 Carbon fixation by Calvin cycle 6
hvu00630 Glyoxylate and dicarboxylate metabolism 5
hvu00195 Photosynthesis 4
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 6
hvu00195 Photosynthesis 5
hvu00710 Carbon fixation by Calvin cycle 4
hvu00630 Glyoxylate and dicarboxylate metabolism 3
hvu00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 11
sbi00195 Photosynthesis 4
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 9
sbi00195 Photosynthesis 3
sbi00710 Carbon fixation by Calvin cycle 3
sbi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 7
bdi00195 Photosynthesis 5
bdi00710 Carbon fixation by Calvin cycle 5
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 8
bdi00710 Carbon fixation by Calvin cycle 7
bdi00195 Photosynthesis 4
bdi00630 Glyoxylate and dicarboxylate metabolism 4
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 7
cre01200 Carbon metabolism 7
cre00195 Photosynthesis 4
cre00010 Glycolysis / Gluconeogenesis 3
cre00030 Pentose phosphate pathway 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106412548 106349325 103843097 103875281 822277 840895 107922459 107935841 102626680 102614495 100815649 100806482 100246378 100259814 7494712 11428156 11437530 101266713 101264004 102587206 102606161 107767301 107780142 4336044 4331495 109943118 542290 123045658 123093580 123426905 123449789 110431784 110436299 100829538 100846055 5715019
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