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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106416653   exosome complex component RRP43 
 ath-u.5   AT1G60080   3'-5'-exoribonuclease family protein 
 gma-u.5   100812232   exosome complex component RRP43 
 gma-u.5   100776087   exosome complex component RRP43 
 vvi-u.5   100253817   uncharacterized LOC100253817 
 ppo-u.5   7473620   uncharacterized LOC7473620 
 ppo-u.5   7484014   uncharacterized LOC7484014 
 mtr-u.5   11420842   exosome complex component RRP43 
 sly-u.5   101259053   uncharacterized LOC101259053 
 osa-u.5   4350355   uncharacterized LOC4350355 
 zma-u.5   100193137   exosome complex exonuclease RRP43 
 zma-u.5   100282327   exosome complex exonuclease RRP43 

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Top 50 coexpressed genes to 106416653 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106416653 (bna-r.1 coexpression data)

CoexMap"106416653"


bnaLOC106416653 | Entrez gene ID : 106416653    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 1 2 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
GO BP
GO:0034473 [list] [network] U1 snRNA 3'-end processing  (11 genes)  IEA  
GO:0034476 [list] [network] U5 snRNA 3'-end processing  (11 genes)  IEA  
GO:0071042 [list] [network] nuclear polyadenylation-dependent mRNA catabolic process  (11 genes)  IEA  
GO:0071028 [list] [network] nuclear mRNA surveillance  (22 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (25 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (25 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (26 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (27 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (28 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (40 genes)  IEA  
GO MF
Protein XP_013713027.1 [sequence] [blastp]
XP_022548277.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_013713027.1)
cyto 5,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_022548277.1)
Subcellular
localization
TargetP
other 5  (predict for XP_013713027.1)
other 5  (predict for XP_022548277.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106416653

.
ath-u.5
for
AT1G60080

.
gma-u.5
for
100812232

.
gma-u.5
for
100776087

.
vvi-u.5
for
100253817

.
ppo-u.5
for
7473620

.
ppo-u.5
for
7484014

.
mtr-u.5
for
11420842

.
sly-u.5
for
101259053

.
osa-u.5
for
4350355

.
zma-u.5
for
100193137

.
zma-u.5
for
100282327

.


Ortholog ID: 7080
Species ath gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT1G60080 LOC100776087 LOC101259053 LOC4350355 LOC100193137 LOC100282327 LOC103838559 LOC100253817 LOC7484014 LOC7473620 LOC11420842 LOC123086873 LOC123096109 LOC123447761 LOC107928852 LOC107921769 LOC106416653 LOC106435838 CHLRE_10g440900v5 LOC8060942 LOC102577517 LOC102577904 LOC102615861 LOC100834643 LOC107817577 LOC107813495
Function* 3'-5'-exoribonuclease family protein exosome complex component RRP43 uncharacterized LOC101259053 uncharacterized LOC4350355 exosome complex exonuclease RRP43 exosome complex exonuclease RRP43 exosome complex component RRP43 uncharacterized LOC100253817 uncharacterized LOC7484014 uncharacterized LOC7473620 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 exosome complex component RRP43 uncharacterized protein exosome complex component RRP43 3'-5'-exoribonuclease/RNA binding protein-like protein 3'-5'-exoribonuclease/RNA binding-like protein uncharacterized LOC102615861 exosome complex component RRP43 uncharacterized LOC107817577 uncharacterized LOC107813495
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 3
ath03008 Ribosome biogenesis in eukaryotes 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 6
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03010 Ribosome 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 5
zma03015 mRNA surveillance pathway 4
zma01230 Biosynthesis of amino acids 4
zma00970 Aminoacyl-tRNA biosynthesis 3
zma00220 Arginine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi03060 Protein export 2
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03018 RNA degradation 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 4
hvu01210 2-Oxocarboxylic acid metabolism 2
hvu04146 Peroxisome 2
hvu00261 Monobactam biosynthesis 2
hvu00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 6
cre03018 RNA degradation 2
cre03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 3
sot04120 Ubiquitin mediated proteolysis 2
sot03010 Ribosome 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 6
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
nta03040 Spliceosome 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842303 100776087 101259053 4350355 100193137 100282327 103838559 100253817 7484014 7473620 11420842 123086873 123096109 123447761 107928852 107921769 106416653 106435838 5716159 8060942 102577517 102577904 102615861 100834643 107817577 107813495
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