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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106418960   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like 
 bna-r.1   111205055   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like 
 bna-r.1   125575053   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like 
 bna-r.1   106447489   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 bra-r.6   103848760   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 ath-u.5   AT1G36310   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ghi-r.1   107918198   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 cit-r.1   102625137   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 gma-u.5   100784028   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 gma-u.5   100807751   alkylated DNA repair protein alkB homolog 8-like 
 vvi-u.5   100262638   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 ppo-u.5   7495129   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 mtr-u.5   25488378   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 sly-u.5   101263510   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 sot-r.1   102591578   alkylated DNA repair protein alkB homolog 8 
 nta-r.1   107784057   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 nta-r.1   107777356   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like 
 nta-r.1   142161627   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like 
 osa-u.5   4330741   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 zma-u.5   103627749   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 tae-r.2   123145461   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 tae-r.2   123138210   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 tae-r.2   123128353   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 hvu-r.1   123403160   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 
 sbi-r.1   8066423   alkylated DNA repair protein alkB homolog 8 
 bdi-r.1   100827681   tRNA (carboxymethyluridine(34)-5-O)-methyltransferase 

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Top 50 coexpressed genes to 106418960 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106418960 (bna-r.1 coexpression data)

CoexMap"106418960"


bnaLOC106418960 | Entrez gene ID : 106418960    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 1 1 2 1 1 1 1 1 3 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0002098 [list] [network] tRNA wobble uridine modification  (45 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0000049 [list] [network] tRNA binding  (83 genes)  IEA  
GO:0008757 [list] [network] S-adenosylmethionine-dependent methyltransferase activity  (525 genes)  IEA  
Protein XP_013715147.2 [sequence] [blastp]
XP_013715148.2 [sequence] [blastp]
XP_022545562.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 4,  mito 1  (predict for XP_013715147.2)
cyto 4,  nucl 4,  mito 1  (predict for XP_013715148.2)
cyto 4,  nucl 4,  mito 1  (predict for XP_022545562.2)
Subcellular
localization
TargetP
other 8  (predict for XP_013715147.2)
other 8  (predict for XP_013715148.2)
other 8  (predict for XP_022545562.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106418960
bna-r.1
for
111205055
bna-r.1
for
125575053
bna-r.1
for
106447489
bra-r.6
for
103848760
ath-u.5
for
AT1G36310
ghi-r.1
for
107918198
cit-r.1
for
102625137
gma-u.5
for
100784028
gma-u.5
for
100807751
vvi-u.5
for
100262638
ppo-u.5
for
7495129
mtr-u.5
for
25488378
sly-u.5
for
101263510
sot-r.1
for
102591578
nta-r.1
for
107784057
nta-r.1
for
107777356
nta-r.1
for
142161627
osa-u.5
for
4330741
zma-u.5
for
103627749
tae-r.2
for
123145461
tae-r.2
for
123138210
tae-r.2
for
123128353
hvu-r.1
for
123403160
sbi-r.1
for
8066423
bdi-r.1
for
100827681


Ortholog ID: 8729
Species bna bna bna bra ath ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC106418960 LOC106447489 LOC106411644 LOC103848760 AT1G36310 LOC107918198 LOC102625137 LOC100784028 LOC100807751 LOC100262638 LOC7495129 LOC25488378 LOC101263510 LOC102591578 LOC107784057 LOC107777356 LOC142161627 LOC4330741 LOC103627749 LOC123145461 LOC123138210 LOC123128353 LOC123403160 LOC8066423 LOC100827681
Function* tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase S-adenosyl-L-methionine-dependent methyltransferases superfamily protein tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase alkylated DNA repair protein alkB homolog 8-like tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase alkylated DNA repair protein alkB homolog 8 tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase tRNA (carboxymethyluridine(34)-5-O)-methyltransferase alkylated DNA repair protein alkB homolog 8 tRNA (carboxymethyluridine(34)-5-O)-methyltransferase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna03410 Base excision repair 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00513 Various types of N-glycan biosynthesis 2
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 4
sot04382 Cornified envelope formation 4
sot04136 Autophagy - other 3
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03040 Spliceosome 4
nta04141 Protein processing in endoplasmic reticulum 4
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 3
nta00190 Oxidative phosphorylation 2
nta04142 Lysosome 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 3
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 8
tae01200 Carbon metabolism 8
tae01230 Biosynthesis of amino acids 8
tae00620 Pyruvate metabolism 5
tae00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03040 Spliceosome 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106418960 106447489 106411644 103848760 840538 107918198 102625137 100784028 100807751 100262638 7495129 25488378 101263510 102591578 107784057 107777356 142161627 4330741 103627749 123145461 123138210 123128353 123403160 8066423 100827681
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