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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106419055   DNA-directed RNA polymerase II subunit 4 
 bna-r.1   125584058   DNA-directed RNA polymerase II subunit 4-like 
 bna-r.1   125594072   DNA-directed RNA polymerases IV and V subunit 4-like 
 bna-r.1   106384918   DNA-directed RNA polymerase II subunit 4 
 bra-r.6   103850351   DNA-directed RNA polymerase II subunit 4 
 bra-r.6   103855841   DNA-directed RNA polymerase II subunit 4 
 bra-r.6   103846853   DNA-directed RNA polymerase II subunit 4 
 ath-u.5   NRPB4   RNA polymerase II, Rpb4, core protein 
 ghi-r.1   121221019   DNA-directed RNA polymerase II subunit 4 
 ghi-r.1   107962112   DNA-directed RNA polymerases IV and V subunit 4 
 ghi-r.1   107928418   DNA-directed RNA polymerase II subunit 4 
 cit-r.1   102623007   DNA-directed RNA polymerases IV and V subunit 4 
 cit-r.1   102621370   DNA-directed RNA polymerase II subunit 4 
 gma-u.5   100775535   DNA-directed RNA polymerases IV and V subunit 4 
 gma-u.5   100527704   DNA-directed RNA polymerase II subunit RPB4 
 gma-u.5   100527316   DNA-directed RNA polymerase II subunit 
 vvi-u.5   100245383   DNA-directed RNA polymerase II subunit 4 
 vvi-u.5   100246461   DNA-directed RNA polymerases IV and V subunit 4 
 ppo-u.5   18105995   DNA-directed RNA polymerases IV and V subunit 4 
 ppo-u.5   7477131   DNA-directed RNA polymerase II subunit 4 
 ppo-u.5   7456265   DNA-directed RNA polymerase II subunit 4 
 mtr-u.5   11418894   DNA-directed RNA polymerase II subunit 4 
 mtr-u.5   11416659   DNA-directed RNA polymerases IV and V subunit 4 
 sly-u.5   101264016   DNA-directed RNA polymerase II subunit 4 
 sly-u.5   101254374   DNA-directed RNA polymerases IV and V subunit 4 
 sot-r.1   102583025   DNA-directed RNA polymerase II subunit 4 
 nta-r.1   107822131   DNA-directed RNA polymerases IV and V subunit 4 
 nta-r.1   107816106   DNA-directed RNA polymerase II subunit 4 
 nta-r.1   107788077   DNA-directed RNA polymerase II subunit 4 
 osa-u.5   4328083   DNA-directed RNA polymerase II subunit 4 
 osa-u.5   4330570   DNA-directed RNA polymerase II subunit 4 
 zma-u.5   100282338   DNA-directed RNA polymerase II 16 kDa polypeptide 
 zma-u.5   100191330   uncharacterized LOC100191330 
 tae-r.2   123138075   DNA-directed RNA polymerases IV and V subunit 4 
 tae-r.2   123131772   DNA-directed RNA polymerase II subunit 4 
 hvu-r.1   123401898   DNA-directed RNA polymerases IV and V subunit 4-like 
 hvu-r.1   123401259   DNA-directed RNA polymerase II subunit 4 
 sbi-r.1   110434981   DNA-directed RNA polymerases IV and V subunit 4-like 
 sbi-r.1   8085204   DNA-directed RNA polymerase II subunit 4 
 bdi-r.1   104583855   DNA-directed RNA polymerases IV and V subunit 4 
 bdi-r.1   100843177   DNA-directed RNA polymerase II subunit 4 
 cre-r.1   CHLRE_07g313185v5   uncharacterized protein 

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Top 50 coexpressed genes to 106419055 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106419055 (bna-r.1 coexpression data)

CoexMap"106419055"


bnaLOC106419055 | Entrez gene ID : 106419055    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 1 3 2 3 2 3 2 2 1 3 2 2 2 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0031990 [list] [network] mRNA export from nucleus in response to heat stress  (9 genes)  IEA  
GO:0045948 [list] [network] positive regulation of translational initiation  (15 genes)  IEA  
GO:0000288 [list] [network] nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  (83 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (114 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (76 genes)  IEA  
GO:0000932 [list] [network] P-body  (160 genes)  IEA  
GO MF
GO:0031369 [list] [network] translation initiation factor binding  (54 genes)  IEA  
GO:0000166 [list] [network] nucleotide binding  (8037 genes)  IEA  
Protein XP_013715259.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 3,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_013715259.1)
Subcellular
localization
TargetP
other 9  (predict for XP_013715259.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106419055
bna-r.1
for
125584058
bna-r.1
for
125594072
bna-r.1
for
106384918
bra-r.6
for
103850351
bra-r.6
for
103855841
bra-r.6
for
103846853
ath-u.5
for
NRPB4
ghi-r.1
for
121221019
ghi-r.1
for
107962112
ghi-r.1
for
107928418
cit-r.1
for
102623007
cit-r.1
for
102621370
gma-u.5
for
100775535
gma-u.5
for
100527704
gma-u.5
for
100527316
vvi-u.5
for
100245383
vvi-u.5
for
100246461
ppo-u.5
for
18105995
ppo-u.5
for
7477131
ppo-u.5
for
7456265
mtr-u.5
for
11418894
mtr-u.5
for
11416659
sly-u.5
for
101264016
sly-u.5
for
101254374
sot-r.1
for
102583025
nta-r.1
for
107822131
nta-r.1
for
107816106
nta-r.1
for
107788077
osa-u.5
for
4328083
osa-u.5
for
4330570
zma-u.5
for
100282338
zma-u.5
for
100191330
tae-r.2
for
123138075
tae-r.2
for
123131772
hvu-r.1
for
123401898
hvu-r.1
for
123401259
sbi-r.1
for
110434981
sbi-r.1
for
8085204
bdi-r.1
for
104583855
bdi-r.1
for
100843177
cre-r.1
for
CHLRE_07g313185v5


Ortholog ID: 1673
Species bna bna bna bra bra ath ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC106384918 LOC106430480 LOC106441264 LOC103850351 LOC103832764 NRPB4 LOC107962112 LOC107928418 LOC107900558 LOC102623007 LOC102621370 LOC100775535 LOC100527704 LOC100809792 LOC100245383 LOC100246461 LOC18105995 LOC7477131 LOC7456265 LOC11418894 LOC11416659 LOC101264016 LOC101254374 LOC102594456 LOC107822131 LOC107788077 LOC107819564 LOC4328083 LOC4330570 LOC100282338 LOC100191330 LOC123138075 LOC123143224 LOC123138076 LOC123401898 LOC123401259 LOC110434981 LOC8085204 LOC104583855 LOC100843177 CHLRE_07g313185v5
Function* DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4-like DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 RNA polymerase II, Rpb4, core protein DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit RPB4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II 16 kDa polypeptide uncharacterized LOC100191330 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerases IV and V subunit 4-like DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4-like DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03020 RNA polymerase 4
ath03420 Nucleotide excision repair 4
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03420 Nucleotide excision repair 4
ghi03050 Proteasome 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 4
ghi01232 Nucleotide metabolism 4
ghi01240 Biosynthesis of cofactors 4
ghi03010 Ribosome 4
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00510 N-Glycan biosynthesis 2
cit00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04136 Autophagy - other 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
gma03420 Nucleotide excision repair 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
gma03420 Nucleotide excision repair 3
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03020 RNA polymerase 3
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03082 ATP-dependent chromatin remodeling 3
ppo03018 RNA degradation 2
ppo03040 Spliceosome 2
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo04120 Ubiquitin mediated proteolysis 3
ppo04144 Endocytosis 3
ppo04145 Phagosome 3
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
mtr03420 Nucleotide excision repair 3
mtr03050 Proteasome 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03420 Nucleotide excision repair 4
mtr03020 RNA polymerase 3
mtr03040 Spliceosome 3
mtr03010 Ribosome 3
mtr04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly00190 Oxidative phosphorylation 4
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly03040 Spliceosome 2
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta03420 Nucleotide excision repair 3
nta03010 Ribosome 3
nta03050 Proteasome 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
nta03050 Proteasome 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta04142 Lysosome 2
nta03040 Spliceosome 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 4
osa03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
osa00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03083 Polycomb repressive complex 3
zma04120 Ubiquitin mediated proteolysis 3
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
zma03420 Nucleotide excision repair 3
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00904 Diterpenoid biosynthesis 3
tae04075 Plant hormone signal transduction 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 4
tae00904 Diterpenoid biosynthesis 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 3
sbi04120 Ubiquitin mediated proteolysis 3
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 5
bdi03420 Nucleotide excision repair 3
bdi03040 Spliceosome 3
bdi03015 mRNA surveillance pathway 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 4
bdi04120 Ubiquitin mediated proteolysis 4
bdi04141 Protein processing in endoplasmic reticulum 4
bdi03040 Spliceosome 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
cre03020 RNA polymerase 4
cre03420 Nucleotide excision repair 4
cre03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106384918 106430480 106441264 103850351 103832764 830853 107962112 107928418 107900558 102623007 102621370 100775535 100527704 100809792 100245383 100246461 18105995 7477131 7456265 11418894 11416659 101264016 101254374 102594456 107822131 107788077 107819564 4328083 4330570 100282338 100191330 123138075 123143224 123138076 123401898 123401259 110434981 8085204 104583855 100843177 5726332
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