ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106420218	uncharacterized LOC106420218
bna-r.1	125584071	uncharacterized LOC125584071
bra-r.6	103855960	uncharacterized LOC103855960
ath-u.5	AT5G12220	las1-like family protein
ghi-r.1	121223293	uncharacterized LOC121223293
ghi-r.1	107938582	uncharacterized LOC107938582
cit-r.1	102625692	uncharacterized LOC102625692
gma-u.5	100818525	uncharacterized LOC100818525
gma-u.5	100775513	uncharacterized LOC100775513
vvi-u.5	100263330	pre-rRNA-processing protein las1
ppo-u.5	7463878	protein LAS1
ppo-u.5	7454880	uncharacterized LOC7454880
mtr-u.5	11432339	pre-rRNA-processing protein las1
sly-u.5	101262228	uncharacterized LOC101262228
sot-r.1	102599960	uncharacterized LOC102599960
nta-r.1	107760939	uncharacterized LOC107760939
nta-r.1	107827832	uncharacterized LOC107827832
osa-u.5	4351697	uncharacterized LOC4351697
zma-u.5	100279349	uncharacterized LOC100279349
tae-r.2	123062350	uncharacterized LOC123062350
tae-r.2	123071125	uncharacterized LOC123071125
tae-r.2	123079487	uncharacterized LOC123079487
hvu-r.1	123444647	uncharacterized LOC123444647
sbi-r.1	8055266	uncharacterized LOC8055266
bdi-r.1	100831838	uncharacterized LOC100831838
cre-r.1	CHLRE_01g002201v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0000460 [list] [network] maturation of 5.8S rRNA	(106 genes)	IEA
GO:0000470 [list] [network] maturation of LSU-rRNA	(106 genes)	IEA

GO CC

GO:0090730 [list] [network] Las1 complex	(2 genes)	IEA
GO:0030687 [list] [network] preribosome, large subunit precursor	(103 genes)	IEA

GO MF

GO:0004519 [list] [network] endonuclease activity

(1036 genes)

IEA

Protein

XP_013716523.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_013716523.2)

Subcellular
localization
TargetP

other 8, chlo 3

(predict for XP_013716523.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106420218	bna-r.1 for 125584071	bra-r.6 for 103855960	ath-u.5 for AT5G12220	ghi-r.1 for 121223293	ghi-r.1 for 107938582	cit-r.1 for 102625692	gma-u.5 for 100818525	gma-u.5 for 100775513	vvi-u.5 for 100263330	ppo-u.5 for 7463878	ppo-u.5 for 7454880	mtr-u.5 for 11432339	sly-u.5 for 101262228	sot-r.1 for 102599960	nta-r.1 for 107760939	nta-r.1 for 107827832	osa-u.5 for 4351697	zma-u.5 for 100279349	tae-r.2 for 123062350	tae-r.2 for 123071125	tae-r.2 for 123079487	hvu-r.1 for 123444647	sbi-r.1 for 8055266	bdi-r.1 for 100831838	cre-r.1 for CHLRE_01g002201v5

Ortholog

Ortholog ID: 9088

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC106420218

uncharacterized LOC125584071

uncharacterized LOC103855960

las1-like family protein

uncharacterized LOC121223293

uncharacterized LOC107938582

uncharacterized LOC102625692

uncharacterized LOC100818525

uncharacterized LOC100775513

pre-rRNA-processing protein las1

protein LAS1

uncharacterized LOC7454880

pre-rRNA-processing protein las1

uncharacterized LOC101262228

uncharacterized LOC102599960

uncharacterized LOC107760939

uncharacterized LOC107827832

uncharacterized LOC4351697

uncharacterized LOC100279349

uncharacterized LOC123062350

uncharacterized LOC123071125

uncharacterized LOC123079487

uncharacterized LOC123444647

uncharacterized LOC8055266

uncharacterized LOC100831838

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5
mtr00230	Purine metabolism	2
mtr01232	Nucleotide metabolism	2
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	6
nta03020	RNA polymerase	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta03008	Ribosome biogenesis in eukaryotes	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03410	Base excision repair	2

Expression

Expression pattern

Entrez Gene ID^*

106420218

125584071

103855960

831096

121223293

107938582

102625692

100818525

100775513

100263330

7463878

7454880

11432339

101262228

102599960

107760939

107827832

4351697

100279349

123062350

123071125

123079487

123444647

8055266

100831838

66051896

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106420218 (bna-r.1 coexpression data)

Top 50 enrichment test to 106420218 (bna-r.1 coexpression data)


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	1	1	2	1	2	1	2	1	1	1	2	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106420218 (bna-r.1 coexpression data)

Top 50 enrichment test to 106420218 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**