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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106424427   pre-rRNA-processing protein TSR1 homolog 
 bna-r.1   125609570   pre-rRNA-processing protein TSR1 homolog 
 bna-r.1   106451690   pre-rRNA-processing protein TSR1 homolog 
 bna-r.1   106425030   pre-rRNA-processing protein TSR1 homolog 
 bra-r.6   103871382   pre-rRNA-processing protein TSR1 homolog 
 bra-r.6   103849552   pre-rRNA-processing protein TSR1 homolog 
 ath-u.5   AT1G42440   pre-rRNA-processing TSR1-like protein 
 ghi-r.1   107922050   pre-rRNA-processing protein TSR1 homolog 
 ghi-r.1   107922049   pre-rRNA-processing protein TSR1 homolog 
 ghi-r.1   107917964   pre-rRNA-processing protein TSR1 homolog 
 cit-r.1   102610155   uncharacterized LOC102610155 
 gma-u.5   100819167   pre-rRNA-processing protein TSR1 homolog 
 gma-u.5   100812533   pre-rRNA-processing protein TSR1 homolog 
 vvi-u.5   100259903   uncharacterized LOC100259903 
 ppo-u.5   7485634   uncharacterized LOC7485634 
 mtr-u.5   25490299   pre-rRNA-processing protein TSR1 homolog 
 sly-u.5   101256673   uncharacterized LOC101256673 
 sot-r.1   102594288   pre-rRNA-processing protein TSR1 homolog 
 nta-r.1   107826245   uncharacterized LOC107826245 
 osa-u.5   4350322   uncharacterized LOC4350322 
 zma-u.5   100216810   P-loop containing nucleoside triphosphate hydrolase superfamily protein 
 tae-r.2   123147796   pre-rRNA-processing protein TSR1 homolog 
 tae-r.2   123156763   pre-rRNA-processing protein TSR1 homolog 
 tae-r.2   123165198   pre-rRNA-processing protein TSR1 homolog 
 hvu-r.1   123407096   pre-rRNA-processing protein TSR1 homolog 
 sbi-r.1   8064759   pre-rRNA-processing protein TSR1 homolog 
 bdi-r.1   100825580   pre-rRNA-processing protein TSR1 homolog 
 cre-r.1   CHLRE_16g673700v5   uncharacterized protein 

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Top 50 coexpressed genes to 106424427 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106424427 (bna-r.1 coexpression data)

CoexMap"106424427"


bnaLOC106424427 | Entrez gene ID : 106424427    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 3 1 2 1 1 1 1 1 1 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000479 [list] [network] endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (42 genes)  IEA  
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (142 genes)  IEA  
GO:0042254 [list] [network] ribosome biogenesis  (963 genes)  IEA  
GO CC
GO:0030688 [list] [network] preribosome, small subunit precursor  (40 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0034511 [list] [network] U3 snoRNA binding  (14 genes)  IEA  
GO:0003924 [list] [network] GTPase activity  (685 genes)  IEA  
GO:0005525 [list] [network] GTP binding  (777 genes)  IEA  
Protein XP_048617646.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  mito 3  (predict for XP_048617646.1)
Subcellular
localization
TargetP
mito 5  (predict for XP_048617646.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106424427
bna-r.1
for
125609570
bna-r.1
for
106451690
bna-r.1
for
106425030
bra-r.6
for
103871382
bra-r.6
for
103849552
ath-u.5
for
AT1G42440
ghi-r.1
for
107922050
ghi-r.1
for
107922049
ghi-r.1
for
107917964
cit-r.1
for
102610155
gma-u.5
for
100819167
gma-u.5
for
100812533
vvi-u.5
for
100259903
ppo-u.5
for
7485634
mtr-u.5
for
25490299
sly-u.5
for
101256673
sot-r.1
for
102594288
nta-r.1
for
107826245
osa-u.5
for
4350322
zma-u.5
for
100216810
tae-r.2
for
123147796
tae-r.2
for
123156763
tae-r.2
for
123165198
hvu-r.1
for
123407096
sbi-r.1
for
8064759
bdi-r.1
for
100825580
cre-r.1
for
CHLRE_16g673700v5


Ortholog ID: 7831
Species bna bna bna bra bra ath ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106424427 LOC125609570 LOC106346144 LOC103871382 LOC103849552 AT1G42440 LOC107922050 LOC107922049 LOC107916910 LOC102610155 LOC100819167 LOC100812533 LOC100259903 LOC7485634 LOC25490299 LOC101256673 LOC102594288 LOC107826245 LOC4350322 LOC100216810 LOC123147796 LOC123156763 LOC123165198 LOC123407096 LOC8064759 LOC100825580 CHLRE_16g673700v5
Function* pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing TSR1-like protein pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog uncharacterized LOC102610155 pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog uncharacterized LOC100259903 uncharacterized LOC7485634 pre-rRNA-processing protein TSR1 homolog uncharacterized LOC101256673 pre-rRNA-processing protein TSR1 homolog uncharacterized LOC107826245 uncharacterized LOC4350322 P-loop containing nucleoside triphosphate hydrolase superfamily protein pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
bna03450 Non-homologous end-joining 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
bna03450 Non-homologous end-joining 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 4
bra04016 MAPK signaling pathway - plant 3
bra04070 Phosphatidylinositol signaling system 3
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
cit03013 Nucleocytoplasmic transport 3
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 7
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu03040 Spliceosome 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03015 mRNA surveillance pathway 2
bdi03020 RNA polymerase 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106424427 125609570 106346144 103871382 103849552 840848 107922050 107922049 107916910 102610155 100819167 100812533 100259903 7485634 25490299 101256673 102594288 107826245 4350322 100216810 123147796 123156763 123165198 123407096 8064759 100825580 5721429
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