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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106424679   COP9 signalosome complex subunit 3-like 
 bna-r.1   106367225   COP9 signalosome complex subunit 3 
 bna-r.1   106372063   COP9 signalosome complex subunit 3-like 
 bna-r.1   106381320   COP9 signalosome complex subunit 3 
 bra-r.6   103850919   COP9 signalosome complex subunit 3 
 bra-r.6   103846499   COP9 signalosome complex subunit 3 
 bra-r.6   103856069   COP9 signalosome complex subunit 3 
 ath-u.5   COP13   Proteasome component (PCI) domain protein 
 ghi-r.1   107892179   COP9 signalosome complex subunit 3 
 ghi-r.1   107957012   COP9 signalosome complex subunit 3 
 ghi-r.1   107915855   COP9 signalosome complex subunit 3 
 cit-r.1   102618670   COP9 signalosome complex subunit 3 
 gma-u.5   100800241   COP9 signalosome complex subunit 3 
 gma-u.5   100783340   COP9 signalosome complex subunit 3 
 vvi-u.5   100266172   COP9 signalosome complex subunit 3 
 ppo-u.5   7496634   COP9 signalosome complex subunit 3 
 ppo-u.5   7467703   COP9 signalosome complex subunit 3 
 mtr-u.5   11408831   COP9 signalosome complex subunit 3 
 sly-u.5   CSN3   COP9 signalosome complex subunit 3 
 sot-r.1   102598757   COP9 signalosome complex subunit 3 
 nta-r.1   107829841   COP9 signalosome complex subunit 3 
 nta-r.1   107815752   COP9 signalosome complex subunit 3 
 nta-r.1   107761283   COP9 signalosome complex subunit 3 
 osa-u.5   4344535   COP9 signalosome complex subunit 3 
 zma-u.5   100283125   uncharacterized LOC100283125 
 zma-u.5   103630847   COP9 signalosome complex subunit 3 
 tae-r.2   123165045   COP9 signalosome complex subunit 3 
 tae-r.2   123155469   COP9 signalosome complex subunit 3 
 tae-r.2   123147518   COP9 signalosome complex subunit 3 
 hvu-r.1   123407094   COP9 signalosome complex subunit 3 
 sbi-r.1   8066119   COP9 signalosome complex subunit 3 
 bdi-r.1   100841145   COP9 signalosome complex subunit 3 
 cre-r.1   CHLRE_16g671100v5   uncharacterized protein 

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Top 50 coexpressed genes to 106424679 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106424679 (bna-r.1 coexpression data)

CoexMap"106424679"


bnaLOC106424679 | Entrez gene ID : 106424679    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 1 3 1 2 1 2 1 1 1 3 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (910 genes)  IEA  
GO CC
GO:0008180 [list] [network] COP9 signalosome  (36 genes)  IEA  
GO MF
Protein XP_013720888.1 [sequence] [blastp]
XP_022565712.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 3,  cysk 1,  nucl_plas 1  (predict for XP_013720888.1)
cyto 4,  nucl 3,  cysk 1,  nucl_plas 1,  mito 1,  cyto_mito 1  (predict for XP_022565712.1)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for XP_013720888.1)
other 6,  mito 3  (predict for XP_022565712.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106424679
bna-r.1
for
106367225
bna-r.1
for
106372063
bna-r.1
for
106381320
bra-r.6
for
103850919
bra-r.6
for
103846499
bra-r.6
for
103856069
ath-u.5
for
COP13
ghi-r.1
for
107892179
ghi-r.1
for
107957012
ghi-r.1
for
107915855
cit-r.1
for
102618670
gma-u.5
for
100800241
gma-u.5
for
100783340
vvi-u.5
for
100266172
ppo-u.5
for
7496634
ppo-u.5
for
7467703
mtr-u.5
for
11408831
sly-u.5
for
CSN3
sot-r.1
for
102598757
nta-r.1
for
107829841
nta-r.1
for
107815752
nta-r.1
for
107761283
osa-u.5
for
4344535
zma-u.5
for
100283125
zma-u.5
for
103630847
tae-r.2
for
123165045
tae-r.2
for
123155469
tae-r.2
for
123147518
hvu-r.1
for
123407094
sbi-r.1
for
8066119
bdi-r.1
for
100841145
cre-r.1
for
CHLRE_16g671100v5


Ortholog ID: 5574
Species bna bna bna bra bra bra ath ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC106424679 LOC106381320 LOC111201475 LOC103850919 LOC103846499 LOC103856069 COP13 LOC107957012 LOC107915855 LOC107899702 LOC102618670 LOC100800241 LOC100783340 LOC100266172 LOC7496634 LOC7467703 LOC11408831 CSN3 LOC102598757 LOC107829841 LOC107815752 LOC107770159 LOC4344535 LOC100283125 LOC103630847 LOC123165045 LOC123155469 LOC123147518 LOC123407094 LOC8066119 LOC100841145 CHLRE_16g671100v5
Function* COP9 signalosome complex subunit 3-like COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3-like COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 Proteasome component (PCI) domain protein COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 uncharacterized LOC100283125 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00730 Thiamine metabolism 2
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 3
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi00061 Fatty acid biosynthesis 2
ghi01040 Biosynthesis of unsaturated fatty acids 2
ghi01212 Fatty acid metabolism 2
ghi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 6
ghi00620 Pyruvate metabolism 6
ghi01200 Carbon metabolism 6
ghi01230 Biosynthesis of amino acids 6
ghi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi00010 Glycolysis / Gluconeogenesis 3
ghi00562 Inositol phosphate metabolism 3
ghi00220 Arginine biosynthesis 2
ghi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
cit03083 Polycomb repressive complex 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 3
gma04141 Protein processing in endoplasmic reticulum 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 2
gma04141 Protein processing in endoplasmic reticulum 2
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 5
mtr00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot03050 Proteasome 2
sot00020 Citrate cycle (TCA cycle) 2
sot01200 Carbon metabolism 2
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta04122 Sulfur relay system 2
nta03018 RNA degradation 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta04122 Sulfur relay system 2
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 4
zma04141 Protein processing in endoplasmic reticulum 4
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 8
zma00510 N-Glycan biosynthesis 4
zma00513 Various types of N-glycan biosynthesis 4
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 9
sbi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106424679 106381320 111201475 103850919 103846499 103856069 831275 107957012 107915855 107899702 102618670 100800241 100783340 100266172 7496634 7467703 11408831 101247481 102598757 107829841 107815752 107770159 4344535 100283125 103630847 123165045 123155469 123147518 123407094 8066119 100841145 5717698
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