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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106425030   pre-rRNA-processing protein TSR1 homolog 
 ath-u.5   AT1G42440   pre-rRNA-processing TSR1-like protein 
 gma-u.5   100819167   pre-rRNA-processing protein TSR1 homolog 
 gma-u.5   100812533   pre-rRNA-processing protein TSR1 homolog 
 vvi-u.5   100259903   uncharacterized LOC100259903 
 ppo-u.5   7485634   uncharacterized LOC7485634 
 mtr-u.5   25490299   pre-rRNA-processing protein TSR1 homolog 
 sly-u.5   101256673   uncharacterized LOC101256673 
 osa-u.5   4350322   uncharacterized LOC4350322 
 zma-u.5   100216810   P-loop containing nucleoside triphosphate hydrolase superfamily protein 

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Top 50 coexpressed genes to 106425030 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106425030 (bna-r.1 coexpression data)

CoexMap"106425030"


bnaLOC106425030 | Entrez gene ID : 106425030    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000479 [list] [network] endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (42 genes)  IEA  
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (142 genes)  IEA  
GO:0042254 [list] [network] ribosome biogenesis  (963 genes)  IEA  
GO CC
GO:0030688 [list] [network] preribosome, small subunit precursor  (40 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0034511 [list] [network] U3 snoRNA binding  (14 genes)  IEA  
GO:0003924 [list] [network] GTPase activity  (685 genes)  IEA  
GO:0005525 [list] [network] GTP binding  (777 genes)  IEA  
Protein XP_048612798.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  mito 3  (predict for XP_048612798.1)
Subcellular
localization
TargetP
chlo 4  (predict for XP_048612798.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106425030

.
ath-u.5
for
AT1G42440

.
gma-u.5
for
100819167

.
gma-u.5
for
100812533

.
vvi-u.5
for
100259903

.
ppo-u.5
for
7485634

.
mtr-u.5
for
25490299

.
sly-u.5
for
101256673

.
osa-u.5
for
4350322

.
zma-u.5
for
100216810

.


Ortholog ID: 7831
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta
Symbol AT1G42440 LOC100819167 LOC100812533 LOC101256673 LOC4350322 LOC100216810 LOC103849552 LOC103871382 LOC100259903 LOC7485634 LOC25490299 LOC123165198 LOC123147796 LOC123407096 LOC107916910 LOC107922049 LOC125609570 LOC106424427 CHLRE_16g673700v5 LOC8064759 LOC102594288 LOC102610155 LOC100825580 LOC107826245
Function* pre-rRNA-processing TSR1-like protein pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog uncharacterized LOC101256673 uncharacterized LOC4350322 P-loop containing nucleoside triphosphate hydrolase superfamily protein pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog uncharacterized LOC100259903 uncharacterized LOC7485634 pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog uncharacterized protein pre-rRNA-processing protein TSR1 homolog pre-rRNA-processing protein TSR1 homolog uncharacterized LOC102610155 pre-rRNA-processing protein TSR1 homolog uncharacterized LOC107826245
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 4
bra04016 MAPK signaling pathway - plant 3
bra04070 Phosphatidylinositol signaling system 3
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu03040 Spliceosome 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
bna03450 Non-homologous end-joining 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
cit03013 Nucleocytoplasmic transport 3
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03015 mRNA surveillance pathway 2
bdi03020 RNA polymerase 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 7
nta03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840848 100819167 100812533 101256673 4350322 100216810 103849552 103871382 100259903 7485634 25490299 123165198 123147796 123407096 107916910 107922049 125609570 106424427 5721429 8064759 102594288 102610155 100825580 107826245
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