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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106429178   pumilio homolog 12-like 
 bna-r.1   106405024   pumilio homolog 12 
 bna-r.1   125603881   putative pumilio homolog 7, chloroplastic 
 ghi-r.1   107893986   putative pumilio homolog 10 
 ghi-r.1   107901455   putative pumilio homolog 7, chloroplastic 
 ghi-r.1   107928934   putative pumilio homolog 7, chloroplastic 
 cit-r.1   102610670   putative pumilio homolog 7, chloroplastic 
 cit-r.1   102624254   pumilio homolog 12 
 cit-r.1   102614027   putative pumilio homolog 7, chloroplastic 
 gma-u.5   100817064   pumilio homolog 2 
 gma-u.5   100805789   putative pumilio homolog 7, chloroplastic 
 gma-u.5   100780898   putative pumilio homolog 7, chloroplastic 
 vvi-u.5   100854713   putative pumilio homolog 8, chloroplastic 
 vvi-u.5   100248421   pumilio homolog 12 
 vvi-u.5   100266352   putative pumilio homolog 7, chloroplastic 
 ppo-u.5   18097226   pumilio homolog 12 
 sly-u.5   101252807   pumilio homolog 12 
 sly-u.5   101265233   pumilio homolog 9-like 
 sly-u.5   101256482   pumilio homolog 12-like 
 sot-r.1   102598744   pumilio homolog 9-like 
 sot-r.1   102582821   pumilio homolog 12-like 
 nta-r.1   107828664   putative pumilio homolog 8, chloroplastic 
 nta-r.1   107825154   putative pumilio homolog 8, chloroplastic 
 osa-u.5   4352254   putative pumilio homolog 7, chloroplastic 
 zma-u.5   100192099   uncharacterized LOC100192099 
 zma-u.5   100193627   Pumilio homolog 12 
 tae-r.2   123102784   putative pumilio homolog 7, chloroplastic 
 tae-r.2   123110969   putative pumilio homolog 7, chloroplastic 
 tae-r.2   123119989   putative pumilio homolog 7, chloroplastic 
 hvu-r.1   123398983   putative pumilio homolog 8, chloroplastic 
 sbi-r.1   8064078   uncharacterized LOC8064078 
 bdi-r.1   100829831   putative pumilio homolog 8, chloroplastic 
 cre-r.1   CHLRE_12g544700v5   uncharacterized protein 

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Top 50 coexpressed genes to 106429178 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106429178 (bna-r.1 coexpression data)

CoexMap"106429178"


bnaLOC106429178 | Entrez gene ID : 106429178    
Species bna ghi cit gma vvi ppo sly sot nta osa zma tae hvu sbi bdi cre bra mtr ath
Paralog 3 3 3 3 3 1 3 2 2 1 2 3 1 1 1 1 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010608 [list] [network] post-transcriptional regulation of gene expression  (384 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
Protein XP_013725371.1 [sequence] [blastp]
XP_048603089.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 2,  cysk_nucl 1,  extr 1,  cyto 1,  mito 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_013725371.1)
chlo 3,  nucl 2,  cysk_nucl 1,  extr 1,  cyto 1,  mito 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_048603089.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013725371.1)
other 8  (predict for XP_048603089.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106429178
bna-r.1
for
106405024
bna-r.1
for
125603881
ghi-r.1
for
107893986
ghi-r.1
for
107901455
ghi-r.1
for
107928934
cit-r.1
for
102610670
cit-r.1
for
102624254
cit-r.1
for
102614027
gma-u.5
for
100817064
gma-u.5
for
100805789
gma-u.5
for
100780898
vvi-u.5
for
100854713
vvi-u.5
for
100248421
vvi-u.5
for
100266352
ppo-u.5
for
18097226
sly-u.5
for
101252807
sly-u.5
for
101265233
sly-u.5
for
101256482
sot-r.1
for
102598744
sot-r.1
for
102582821
nta-r.1
for
107828664
nta-r.1
for
107825154
osa-u.5
for
4352254
zma-u.5
for
100192099
zma-u.5
for
100193627
tae-r.2
for
123102784
tae-r.2
for
123110969
tae-r.2
for
123119989
hvu-r.1
for
123398983
sbi-r.1
for
8064078
bdi-r.1
for
100829831
cre-r.1
for
CHLRE_12g544700v5


Ortholog ID: 1152
Species bna bna bna bra ghi ghi ghi cit cit cit gma gma vvi vvi vvi ppo ppo sly sly sly sot sot nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC106385669 LOC106423812 LOC106422793 LOC103840015 LOC107901455 LOC107952173 LOC107962450 LOC102610670 LOC102624254 LOC102614027 LOC100780898 LOC100799294 LOC100248421 LOC100266352 LOC100250413 LOC18097226 LOC18094279 LOC101252807 LOC101265233 LOC101256482 LOC102598744 LOC102582821 LOC107825154 LOC4352254 LOC100192099 LOC100193627 LOC123102784 LOC123110969 LOC123119989 LOC123398983 LOC8064078 LOC100829831 CHLRE_12g544700v5
Function* pumilio homolog 12-like putative pumilio homolog 7, chloroplastic putative pumilio homolog 7, chloroplastic pumilio homolog 9-like putative pumilio homolog 7, chloroplastic pumilio homolog 12 putative pumilio homolog 7, chloroplastic putative pumilio homolog 7, chloroplastic pumilio homolog 12 putative pumilio homolog 7, chloroplastic putative pumilio homolog 7, chloroplastic pumilio homolog 1 pumilio homolog 12 putative pumilio homolog 7, chloroplastic uncharacterized LOC100250413 pumilio homolog 12 pumilio homolog 12 pumilio homolog 12 pumilio homolog 9-like pumilio homolog 12-like pumilio homolog 9-like pumilio homolog 12-like putative pumilio homolog 8, chloroplastic putative pumilio homolog 7, chloroplastic uncharacterized LOC100192099 Pumilio homolog 12 putative pumilio homolog 7, chloroplastic putative pumilio homolog 7, chloroplastic putative pumilio homolog 7, chloroplastic putative pumilio homolog 8, chloroplastic uncharacterized LOC8064078 putative pumilio homolog 8, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 5
ghi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 8
ghi04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 4
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
gma00260 Glycine, serine and threonine metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 3
vvi01200 Carbon metabolism 3
vvi00785 Lipoic acid metabolism 2
vvi00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo04382 Cornified envelope formation 2
ppo04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00270 Cysteine and methionine metabolism 2
sly00350 Tyrosine metabolism 2
sly00360 Phenylalanine metabolism 2
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sly00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 7
nta00073 Cutin, suberine and wax biosynthesis 4
nta00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 3
osa00730 Thiamine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106385669 106423812 106422793 103840015 107901455 107952173 107962450 102610670 102624254 102614027 100780898 100799294 100248421 100266352 100250413 18097226 18094279 101252807 101265233 101256482 102598744 102582821 107825154 4352254 100192099 100193627 123102784 123110969 123119989 123398983 8064078 100829831 5719561
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