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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106432168   splicing factor 3B subunit 2 
 bna-r.1   106446386   splicing factor 3B subunit 2-like 
 bna-r.1   106375720   splicing factor 3B subunit 2-like 
 bna-r.1   125577352   splicing factor 3B subunit 2-like 
 bra-r.6   103834183   splicing factor 3B subunit 2 
 bra-r.6   103859260   splicing factor 3B subunit 2 
 ath-u.5   AT4G21660   proline-rich spliceosome-associated (PSP) family protein 
 ghi-r.1   107962985   splicing factor 3B subunit 2 
 ghi-r.1   107901670   splicing factor 3B subunit 2 
 cit-r.1   102613606   uncharacterized LOC102613606 
 gma-u.5   100815606   splicing factor 3B subunit 2 
 gma-u.5   100810640   splicing factor 3B subunit 2 
 gma-u.5   100797656   splicing factor 3B subunit 2 
 vvi-u.5   100241488   uncharacterized LOC100241488 
 ppo-u.5   7485563   uncharacterized LOC7485563 
 ppo-u.5   7490813   uncharacterized LOC7490813 
 mtr-u.5   25493205   splicing factor 3B subunit 2 
 mtr-u.5   11446801   splicing factor 3B subunit 2 
 sly-u.5   101264481   uncharacterized LOC101264481 
 sly-u.5   101261586   uncharacterized LOC101261586 
 sot-r.1   102603948   splicing factor 3B subunit 2 
 sot-r.1   102604583   splicing factor 3B subunit 2-like 
 nta-r.1   107808380   uncharacterized LOC107808380 
 nta-r.1   107785564   uncharacterized LOC107785564 
 nta-r.1   107771044   uncharacterized LOC107771044 
 osa-u.5   4331222   uncharacterized LOC4331222 
 zma-u.5   100272396   uncharacterized LOC100272396 
 tae-r.2   123140034   splicing factor 3B subunit 2 
 tae-r.2   123146294   splicing factor 3B subunit 2 
 hvu-r.1   123401254   splicing factor 3B subunit 2-like 
 sbi-r.1   8069247   splicing factor 3B subunit 2 
 bdi-r.1   100838398   splicing factor 3B subunit 2 
 cre-r.1   CHLRE_12g514450v5   uncharacterized protein 

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Top 50 coexpressed genes to 106432168 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106432168 (bna-r.1 coexpression data)

CoexMap"106432168"


bnaLOC106432168 | Entrez gene ID : 106432168    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 2 1 3 1 2 2 2 2 3 1 1 2 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005689 [list] [network] U12-type spliceosomal complex  (61 genes)  IEA  
GO:0005686 [list] [network] U2 snRNP  (88 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (154 genes)  IEA  
GO:0005684 [list] [network] U2-type spliceosomal complex  (194 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
Protein XP_013728468.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_013728468.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_013728468.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106432168
bna-r.1
for
106446386
bna-r.1
for
106375720
bna-r.1
for
125577352
bra-r.6
for
103834183
bra-r.6
for
103859260
ath-u.5
for
AT4G21660
ghi-r.1
for
107962985
ghi-r.1
for
107901670
cit-r.1
for
102613606
gma-u.5
for
100815606
gma-u.5
for
100810640
gma-u.5
for
100797656
vvi-u.5
for
100241488
ppo-u.5
for
7485563
ppo-u.5
for
7490813
mtr-u.5
for
25493205
mtr-u.5
for
11446801
sly-u.5
for
101264481
sly-u.5
for
101261586
sot-r.1
for
102603948
sot-r.1
for
102604583
nta-r.1
for
107808380
nta-r.1
for
107785564
nta-r.1
for
107771044
osa-u.5
for
4331222
zma-u.5
for
100272396
tae-r.2
for
123140034
tae-r.2
for
123146294
hvu-r.1
for
123401254
sbi-r.1
for
8069247
bdi-r.1
for
100838398
cre-r.1
for
CHLRE_12g514450v5


Ortholog ID: 6618
Species bna bna bna bra bra ath ghi ghi cit gma gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC106446386 LOC106375720 LOC125577352 LOC103834183 LOC103859260 AT4G21660 LOC107962985 LOC107901670 LOC102613606 LOC100815606 LOC100810640 LOC100797656 LOC100241488 LOC7485563 LOC7490813 LOC25493205 LOC11446801 LOC101264481 LOC101261586 LOC102603948 LOC102604583 LOC107808380 LOC107785564 LOC107771044 LOC4331222 LOC100272396 LOC123140034 LOC123146294 LOC123401254 LOC8069247 LOC100838398 CHLRE_12g514450v5
Function* splicing factor 3B subunit 2-like splicing factor 3B subunit 2-like splicing factor 3B subunit 2-like splicing factor 3B subunit 2 splicing factor 3B subunit 2 proline-rich spliceosome-associated (PSP) family protein splicing factor 3B subunit 2 splicing factor 3B subunit 2 uncharacterized LOC102613606 splicing factor 3B subunit 2 splicing factor 3B subunit 2 splicing factor 3B subunit 2 uncharacterized LOC100241488 uncharacterized LOC7485563 uncharacterized LOC7490813 splicing factor 3B subunit 2 splicing factor 3B subunit 2 uncharacterized LOC101264481 uncharacterized LOC101261586 splicing factor 3B subunit 2 splicing factor 3B subunit 2-like uncharacterized LOC107808380 uncharacterized LOC107785564 uncharacterized LOC107771044 uncharacterized LOC4331222 uncharacterized LOC100272396 splicing factor 3B subunit 2 splicing factor 3B subunit 2 splicing factor 3B subunit 2-like splicing factor 3B subunit 2 splicing factor 3B subunit 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03008 Ribosome biogenesis in eukaryotes 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03018 RNA degradation 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
sly03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 4
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03250 Viral life cycle - HIV-1 3
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta04141 Protein processing in endoplasmic reticulum 4
nta03250 Viral life cycle - HIV-1 2
nta04120 Ubiquitin mediated proteolysis 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00330 Arginine and proline metabolism 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 12
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106446386 106375720 125577352 103834183 103859260 828253 107962985 107901670 102613606 100815606 100810640 100797656 100241488 7485563 7490813 25493205 11446801 101264481 101261586 102603948 102604583 107808380 107785564 107771044 4331222 100272396 123140034 123146294 123401254 8069247 100838398 5728547
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