ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106433031	sister chromatid cohesion 1 protein 4
ath-u.5	SYN4	sister chromatid cohesion 1 protein 4
gma-u.5	100809967	sister chromatid cohesion 1 protein 4
gma-u.5	100803412	sister chromatid cohesion 1 protein 4
vvi-u.5	100263480	sister chromatid cohesion 1 protein 4
ppo-u.5	7472469	sister chromatid cohesion 1 protein 4
ppo-u.5	7464594	sister chromatid cohesion 1 protein 4
mtr-u.5	25498917	sister chromatid cohesion 1 protein 4
sly-u.5	101252346	sister chromatid cohesion 1 protein 4
osa-u.5	4325108	sister chromatid cohesion 1 protein 4
zma-u.5	100383357	uncharacterized LOC100383357
zma-u.5	103636402	uncharacterized LOC103636402

functional annotation

KEGG

GO BP

GO:0007130 [list] [network] synaptonemal complex assembly	(18 genes)	IEA
GO:1990414 [list] [network] replication-born double-strand break repair via sister chromatid exchange	(22 genes)	IEA
GO:0007064 [list] [network] mitotic sister chromatid cohesion	(74 genes)	IEA

GO CC

GO:0000795 [list] [network] synaptonemal complex	(18 genes)	IEA
GO:0008278 [list] [network] cohesin complex	(24 genes)	IEA

GO MF

GO:0003682 [list] [network] chromatin binding

(399 genes)

IEA

Protein

XP_013729336.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, cysk 3, cyto_nucl 3

(predict for XP_013729336.1)

Subcellular
localization
TargetP

other 9

(predict for XP_013729336.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106433031	ath-u.5 for SYN4	gma-u.5 for 100809967	gma-u.5 for 100803412	vvi-u.5 for 100263480	ppo-u.5 for 7472469	ppo-u.5 for 7464594	mtr-u.5 for 25498917	sly-u.5 for 101252346	osa-u.5 for 4325108	zma-u.5 for 100383357	zma-u.5 for 103636402

Ortholog ID: 4439

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SYN4

Function^*

sister chromatid cohesion 1 protein 4

sister chromatid cohesion 1 protein 4-like

sister chromatid cohesion 1 protein 4

hypothetical protein

sister chromatid cohesion 1 protein 4

uncharacterized LOC100383357

uncharacterized LOC103636402

uncharacterized LOC123189310

uncharacterized LOC123062862

uncharacterized LOC123445058

sister chromatid cohesion 1 protein 4

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2
ghi00230	Purine metabolism	2
ghi00232	Caffeine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00310	Lysine degradation	4
gma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00310	Lysine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3
mtr03018	RNA degradation	2
mtr00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	4
nta03083	Polycomb repressive complex	4
nta03250	Viral life cycle - HIV-1	4
nta02010	ABC transporters	2
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	4
nta03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	3
tae04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

106433031

125594124

103851033

103856189

831487

107895058

107928341

102622501

100803412

100809967

100263480

7472469

7464594

25498917

101252346

102601619

107760537

107817441

4325108

100383357

103636402

123189310

123062862

123445058

8056111

100841414

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106433031 (bna-r.1 coexpression data)

Top 50 enrichment test to 106433031 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	1	2	1	2	1	1	1	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106433031 (bna-r.1 coexpression data)

Top 50 enrichment test to 106433031 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**