ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106434172	ras-related protein RABD2a
ath-u.5	RAB1A	RAB GTPase homolog 1A
ath-u.5	RA-5	RAS 5
ath-u.5	ATFP8	Ras-related small GTP-binding family protein
gma-u.5	RAB7P	ras-related protein RABD1-like
gma-u.5	100813403	ras-related protein RABD2a
gma-u.5	100818694	GTP-binding protein YPTM2
vvi-u.5	100254021	ras-related protein RABD1
vvi-u.5	100245986	GTP-binding protein YPTM2
vvi-u.5	100248422	GTP-binding protein YPTM2
ppo-u.5	18098341	ras-related protein RABD1
ppo-u.5	7461998	GTP-binding protein YPTM2
ppo-u.5	7453919	GTP-binding protein YPTM2
mtr-u.5	11434813	ras-related protein RABD1
mtr-u.5	11442372	ras-related protein RABD2a
mtr-u.5	25493604	GTP-binding protein YPTM2
sly-u.5	Rab1B	small GTP-binding protein
sly-u.5	101252882	ras-related protein RABD2a
sly-u.5	Rab1C	small GTP-binding protein
osa-u.5	4337556	GTP-binding protein YPTM1
osa-u.5	4330181	GTP-binding protein YPTM2
osa-u.5	4325347	GTP-binding protein YPTM2
zma-u.5	542531	ypt homolog 1
zma-u.5	542396	ypt homolog 2
zma-u.5	100191848	Ras protein RIC1

Top 50 coexpressed genes to 106434172 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106434172 (bna-r.1 coexpression data)

CoexMap"106434172"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003924 [list] [network] GTPase activity	(685 genes)	IEA
GO:0005525 [list] [network] GTP binding	(777 genes)	IEA

Protein

XP_013730457.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, nucl 3, cyto 2, extr 2

(predict for XP_013730457.1)

Subcellular
localization
TargetP

scret 8, other 4

(predict for XP_013730457.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106434172	ath-u.5 for RAB1A	ath-u.5 for RA-5	ath-u.5 for ATFP8	gma-u.5 for RAB7P	gma-u.5 for 100813403	gma-u.5 for 100818694	vvi-u.5 for 100254021	vvi-u.5 for 100245986	vvi-u.5 for 100248422	ppo-u.5 for 18098341	ppo-u.5 for 7461998	ppo-u.5 for 7453919	mtr-u.5 for 11434813	mtr-u.5 for 11442372	mtr-u.5 for 25493604	sly-u.5 for Rab1B	sly-u.5 for 101252882	sly-u.5 for Rab1C	osa-u.5 for 4337556	osa-u.5 for 4330181	osa-u.5 for 4325347	zma-u.5 for 542531	zma-u.5 for 542396	zma-u.5 for 100191848

Ortholog

Ortholog ID: 494

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RAB1C

ATFP8

RAB7P

Rab1A

Rab1B

Function^*

ras-related protein RABD2b

ras-related protein RABD2a

ras-related protein RABD2b

RAB GTPase homolog 1C

Ras-related small GTP-binding family protein

GTP-binding protein YPTM2

ras-related protein RABD2a

GTP-binding protein YPTM2-like

GTP-binding protein YPTM2

ras-related protein RABD1-like

ras-related protein RABD1

GTP-binding protein YPTM2

ras-related protein RABD1

GTP-binding protein YPTM2

small GTP-binding protein

ras-related protein RABD2a-like

GTP-binding protein YPTM2

ras-related protein RABD2a-like

ras-related protein RIC1-like

GTP-binding protein YPTM1

ypt homolog 1

Ras protein RIC1

ras-related protein RIC1

ras-related protein RABD1

ras-related protein RABD1-like

GTP-binding protein YPTM2-like

ras-related protein RIC1

ras-related protein RABD2c

ras-related protein RABD1

GTP-binding protein YPTM2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2
bna01240	Biosynthesis of cofactors	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2
bna01240	Biosynthesis of cofactors	2
bna04141	Protein processing in endoplasmic reticulum	2
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	4
bra03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	4
bra04070	Phosphatidylinositol signaling system	4
bra04075	Plant hormone signal transduction	4
bra04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	5
ath04136	Autophagy - other	3
ath04144	Endocytosis	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	4
ghi04142	Lysosome	4
ghi04145	Phagosome	4
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	3
cit04144	Endocytosis	2
cit04145	Phagosome	2
cit04148	Efferocytosis	2
cit04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00071	Fatty acid degradation	2
gma00280	Valine, leucine and isoleucine degradation	2
gma00592	alpha-Linolenic acid metabolism	2
gma01040	Biosynthesis of unsaturated fatty acids	2
gma01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2
gma04141	Protein processing in endoplasmic reticulum	2
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	4
vvi04145	Phagosome	2
vvi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	4
ppo00190	Oxidative phosphorylation	4
ppo03083	Polycomb repressive complex	2
ppo04120	Ubiquitin mediated proteolysis	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	5
ppo03083	Polycomb repressive complex	2
ppo04120	Ubiquitin mediated proteolysis	2
ppo04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3
mtr04141	Protein processing in endoplasmic reticulum	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	3
sly04070	Phosphatidylinositol signaling system	3
sly04075	Plant hormone signal transduction	3
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	6
sot04145	Phagosome	5
sot04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00561	Glycerolipid metabolism	2
sot00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	6
nta04145	Phagosome	6
nta04142	Lysosome	4
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	4
osa04136	Autophagy - other	4
osa04145	Phagosome	2
osa04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	4
osa00600	Sphingolipid metabolism	2
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	7
zma04144	Endocytosis	3
zma04145	Phagosome	2
zma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	2
tae04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	5
tae04144	Endocytosis	4
tae04145	Phagosome	4
tae04148	Efferocytosis	4
tae00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	3
sbi04120	Ubiquitin mediated proteolysis	3
sbi04144	Endocytosis	2
sbi04146	Peroxisome	2
sbi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	4
sbi00071	Fatty acid degradation	3
sbi00410	beta-Alanine metabolism	3
sbi00592	alpha-Linolenic acid metabolism	3
sbi00640	Propanoate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi01240	Biosynthesis of cofactors	2
bdi04145	Phagosome	2
bdi04148	Efferocytosis	2
bdi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	6
bdi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	5

Expression

Expression pattern

Entrez Gene ID^*

106406928

106381870

103843860

103839540

827468

820345

107912205

107922713

102624523

102628383

100818694

100796206

100254021

100248422

7477801

7461998

11434813

25493604

544010

544011

102587256

102596483

107779090

107813681

4324675

4337556

542531

100191848

123061292

123179836

123426463

123442625

8078596

8065289

100835716

100841613

5728675

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Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	sbi	ghi	sot	nta	cre	tae
Paralog	1	3	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106434172 (bna-r.1 coexpression data)

Top 50 enrichment test to 106434172 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**