Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106437495   organelle RRM domain-containing protein 1, chloroplastic 
 ath-u.5   AT4G20030   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100305971   uncharacterized LOC100305971 
 gma-u.5   100802603   glycine-rich RNA-binding protein 4, mitochondrial 
 vvi-u.5   100254274   organelle RRM domain-containing protein 6, chloroplastic 
 ppo-u.5   7471615   organelle RRM domain-containing protein 1, chloroplastic 
 mtr-u.5   11433950   multiple RNA-binding domain-containing protein 1 
 sly-u.5   101264588   small RNA-binding protein 11, chloroplastic 

close


Top 50 coexpressed genes to 106437495 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 106437495 (bna-r.1 coexpression data)

CoexMap"106437495"


bnaLOC106437495 | Entrez gene ID : 106437495    
Species bna ath gma vvi ppo mtr sly cre ghi cit hvu bdi sot bra sbi tae nta zma osa
Paralog 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005685 [list] [network] U1 snRNP  (102 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (106 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (154 genes)  IEA  
GO MF
GO:0030619 [list] [network] U1 snRNA binding  (47 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
Protein XP_013733848.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_013733848.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_013733848.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106437495

.
ath-u.5
for
AT4G20030

.
gma-u.5
for
100305971

.
gma-u.5
for
100802603

.
vvi-u.5
for
100254274

.
ppo-u.5
for
7471615

.
mtr-u.5
for
11433950

.
sly-u.5
for
101264588

.


Ortholog ID: 12667
Species ath gma gma sly bra vvi ppo mtr ghi ghi bna sot cit nta nta
Symbol AT4G20030 LOC100802603 LOC100305971 LOC101264588 LOC103857919 LOC100254274 LOC7471615 LOC11433950 LOC107921154 LOC107952434 LOC106437495 LOC102604708 LOC102624831 LOC107831044 LOC107779718
Function* RNA-binding (RRM/RBD/RNP motifs) family protein glycine-rich RNA-binding protein 4, mitochondrial uncharacterized LOC100305971 small RNA-binding protein 11, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 6, chloroplastic organelle RRM domain-containing protein 1, chloroplastic multiple RNA-binding domain-containing protein 1 organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic cold-inducible RNA-binding protein organelle RRM domain-containing protein 1, chloroplastic small RNA-binding protein 11, chloroplastic small RNA-binding protein 11, chloroplastic
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03250 Viral life cycle - HIV-1 2
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
gma04075 Plant hormone signal transduction 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly01200 Carbon metabolism 3
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 4
mtr04075 Plant hormone signal transduction 3
mtr04016 MAPK signaling pathway - plant 2
mtr04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 4
sot00710 Carbon fixation by Calvin cycle 3
sot01230 Biosynthesis of amino acids 3
sot00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 8
cit03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827748 100802603 100305971 101264588 103857919 100254274 7471615 11433950 107921154 107952434 106437495 102604708 102624831 107831044 107779718
The preparation time of this page was 0.1 [sec].