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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106437707   DNA repair protein RAD50-like 
 bna-r.1   106387982   DNA repair protein RAD50 
 bra-r.6   103857408   DNA repair protein RAD50 
 ath-u.5   RAD50   DNA repair-recombination protein (RAD50) 
 ghi-r.1   107939147   DNA repair protein RAD50 
 ghi-r.1   107934476   DNA repair protein RAD50 
 cit-r.1   102616752   DNA repair protein RAD50 
 gma-u.5   100818545   DNA repair protein RAD50 
 vvi-u.5   100243413   DNA repair protein RAD50 
 ppo-u.5   7495838   DNA repair protein RAD50 
 mtr-u.5   11435676   DNA repair protein RAD50 
 sly-u.5   101256382   DNA repair protein RAD50 
 sot-r.1   102580839   DNA repair protein RAD50 
 nta-r.1   107797609   DNA repair protein RAD50-like 
 nta-r.1   107800461   DNA repair protein RAD50 
 osa-u.5   4329409   DNA repair protein RAD50 
 zma-u.5   103653563   DNA repair protein RAD50 
 tae-r.2   123110672   DNA repair protein RAD50 
 tae-r.2   123102504   DNA repair protein RAD50 
 tae-r.2   123119676   DNA repair protein RAD50 
 hvu-r.1   123399737   DNA repair protein RAD50 
 sbi-r.1   8056059   DNA repair protein RAD50 
 bdi-r.1   100845007   DNA repair protein RAD50 
 cre-r.1   CHLRE_03g192550v5   uncharacterized protein 

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Top 50 coexpressed genes to 106437707 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106437707 (bna-r.1 coexpression data)

CoexMap"106437707"


bnaLOC106437707 | Entrez gene ID : 106437707    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03440 [list] [network] Homologous recombination (136 genes)
bna03450 [list] [network] Non-homologous end-joining (13 genes)
GO BP
GO:0000722 [list] [network] telomere maintenance via recombination  (8 genes)  IEA  
GO:0070192 [list] [network] chromosome organization involved in meiotic cell cycle  (63 genes)  IEA  
GO:0007004 [list] [network] telomere maintenance via telomerase  (129 genes)  IEA  
GO:0006302 [list] [network] double-strand break repair  (365 genes)  IEA  
GO CC
GO:0030870 [list] [network] Mre11 complex  (6 genes)  IEA  
GO:0000794 [list] [network] condensed nuclear chromosome  (39 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0051880 [list] [network] G-quadruplex DNA binding  (2 genes)  IEA  
GO:0003691 [list] [network] double-stranded telomeric DNA binding  (29 genes)  IEA  
GO:0043047 [list] [network] single-stranded telomeric DNA binding  (129 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (1360 genes)  IEA  
Protein XP_013734100.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_013734100.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013734100.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106437707
bna-r.1
for
106387982
bra-r.6
for
103857408
ath-u.5
for
RAD50
ghi-r.1
for
107939147
ghi-r.1
for
107934476
cit-r.1
for
102616752
gma-u.5
for
100818545
vvi-u.5
for
100243413
ppo-u.5
for
7495838
mtr-u.5
for
11435676
sly-u.5
for
101256382
sot-r.1
for
102580839
nta-r.1
for
107797609
nta-r.1
for
107800461
osa-u.5
for
4329409
zma-u.5
for
103653563
tae-r.2
for
123110672
tae-r.2
for
123102504
tae-r.2
for
123119676
hvu-r.1
for
123399737
sbi-r.1
for
8056059
bdi-r.1
for
100845007
cre-r.1
for
CHLRE_03g192550v5


Ortholog ID: 10689
Species bna bna bra ath ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106437707 LOC106387982 LOC103857408 RAD50 LOC107939147 LOC107934476 LOC102616752 LOC100818545 LOC100243413 LOC7495838 LOC11435676 LOC101256382 LOC102580839 LOC107797609 LOC107800461 LOC4329409 LOC103653563 LOC123110672 LOC123102504 LOC123119676 LOC123399737 LOC8056059 LOC100845007 CHLRE_03g192550v5
Function* DNA repair protein RAD50-like DNA repair protein RAD50 DNA repair protein RAD50 DNA repair-recombination protein (RAD50) DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50-like DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
bna03450 Non-homologous end-joining 4
bna03013 Nucleocytoplasmic transport 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 7
bna03440 Homologous recombination 2
bna03450 Non-homologous end-joining 2
bna03420 Nucleotide excision repair 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 7
bra03040 Spliceosome 6
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 4
ath03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 4
vvi03018 RNA degradation 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03440 Homologous recombination 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
sly04120 Ubiquitin mediated proteolysis 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03440 Homologous recombination 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03440 Homologous recombination 3
tae03450 Non-homologous end-joining 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03440 Homologous recombination 3
tae03450 Non-homologous end-joining 3
tae03020 RNA polymerase 3
tae03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03440 Homologous recombination 3
tae03450 Non-homologous end-joining 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03450 Non-homologous end-joining 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03013 Nucleocytoplasmic transport 2
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03440 Homologous recombination 2
cre03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106437707 106387982 103857408 817756 107939147 107934476 102616752 100818545 100243413 7495838 11435676 101256382 102580839 107797609 107800461 4329409 103653563 123110672 123102504 123119676 123399737 8056059 100845007 5718688
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