ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106439275	PHD finger protein ALFIN-LIKE 2-like
bna-r.1	111198625	PHD finger protein ALFIN-LIKE 3
bna-r.1	111215755	PHD finger protein ALFIN-LIKE 2-like
bna-r.1	125580899	PHD finger protein ALFIN-LIKE 4-like
bra-r.6	103872249	PHD finger protein ALFIN-LIKE 7
bra-r.6	103870369	PHD finger protein ALFIN-LIKE 2
bra-r.6	103827517	PHD finger protein ALFIN-LIKE 6
ath-u.5	AL5	alfin-like 5
ath-u.5	AL6	alfin-like 6
ath-u.5	AL2	alfin-like 2
ghi-r.1	107913957	PHD finger protein ALFIN-LIKE 7
ghi-r.1	107905795	PHD finger protein ALFIN-LIKE 7
ghi-r.1	107903455	PHD finger protein ALFIN-LIKE 1
cit-r.1	102611614	PHD finger protein ALFIN-LIKE 4-like
cit-r.1	102612029	PHD finger protein ALFIN-LIKE 7
cit-r.1	102609956	PHD finger protein ALFIN-LIKE 4
gma-u.5	100500110	PHD finger protein Alfin-like
gma-u.5	100807826	PHD finger protein Alfin1
vvi-u.5	100247536	PHD finger protein ALFIN-LIKE 4
vvi-u.5	100852794	PHD finger protein ALFIN-LIKE 4
vvi-u.5	100263503	PHD finger protein ALFIN-LIKE 4
ppo-u.5	7490325	PHD finger protein ALFIN-LIKE 2
ppo-u.5	7497594	PHD finger protein ALFIN-LIKE 4
ppo-u.5	7496695	PHD finger protein ALFIN-LIKE 4
mtr-u.5	25481987	PHD finger protein ALFIN-LIKE 4
mtr-u.5	25491446	PHD finger protein ALFIN-LIKE 1
mtr-u.5	25494361	PHD finger protein Alfin1
sly-u.5	fin1	putative alfin-like transcription factor
sly-u.5	543925	nucleic acid-binding protein
sly-u.5	101264911	PHD finger protein ALFIN-LIKE 4
sot-r.1	102600287	PHD finger protein ALFIN-LIKE 4-like
sot-r.1	102580223	PHD finger protein ALFIN-LIKE 1-like
sot-r.1	102583083	PHD finger protein ALFIN-LIKE 2-like
nta-r.1	107787715	PHD finger protein ALFIN-LIKE 4-like
nta-r.1	107792882	PHD finger protein Alfin1-like
nta-r.1	107790155	PHD finger protein ALFIN-LIKE 1-like
osa-u.5	4338816	PHD finger protein ALFIN-LIKE 5-like
osa-u.5	9269003	PHD finger protein ALFIN-LIKE 7-like
osa-u.5	4343868	PHD finger protein ALFIN-LIKE 9-like
zma-u.5	100216893	ALFIN-like transcription factor
zma-u.5	100283842	uncharacterized LOC100283842
zma-u.5	100193399	ALFIN-like transcription factor
tae-r.2	123071781	PHD finger protein ALFIN-LIKE 6
tae-r.2	123062912	PHD finger protein ALFIN-LIKE 6
tae-r.2	123056239	PHD finger protein ALFIN-LIKE 5
hvu-r.1	123442808	PHD finger protein ALFIN-LIKE 5
hvu-r.1	123453008	PHD finger protein ALFIN-LIKE 3-like
hvu-r.1	123425355	PHD finger protein ALFIN-LIKE 9-like
sbi-r.1	8057052	PHD finger protein ALFIN-LIKE 3
sbi-r.1	8075860	PHD finger protein ALFIN-LIKE 7
sbi-r.1	8072592	PHD finger protein ALFIN-LIKE 7
bdi-r.1	100829192	PHD finger protein ALFIN-LIKE 1
bdi-r.1	100822053	PHD finger protein ALFIN-LIKE 2
bdi-r.1	100830499	PHD finger protein ALFIN-LIKE 6
cre-r.1	CHLRE_07g357650v5	uncharacterized protein
cre-r.1	CHLRE_10g441050v5	uncharacterized protein
cre-r.1	CHLRE_07g320950v5	uncharacterized protein

Top 50 coexpressed genes to 106439275 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106439275 (bna-r.1 coexpression data)

CoexMap"106439275"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(5322 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(9971 genes)

IEA

GO MF

GO:0042393 [list] [network] histone binding	(165 genes)	IEA
GO:0003712 [list] [network] transcription coregulator activity	(379 genes)	IEA
GO:0000976 [list] [network] transcription cis-regulatory region binding	(1304 genes)	IEA

Protein

XP_013736136.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 3, chlo_mito 2, cyto 1, mito 1

(predict for XP_013736136.2)

Subcellular
localization
TargetP

scret 9

(predict for XP_013736136.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106439275	bna-r.1 for 111198625	bna-r.1 for 111215755	bna-r.1 for 125580899	bra-r.6 for 103872249	bra-r.6 for 103870369	bra-r.6 for 103827517	ath-u.5 for AL5	ath-u.5 for AL6	ath-u.5 for AL2	ghi-r.1 for 107913957	ghi-r.1 for 107905795	ghi-r.1 for 107903455	cit-r.1 for 102611614	cit-r.1 for 102612029	cit-r.1 for 102609956	gma-u.5 for 100500110	gma-u.5 for 100807826	vvi-u.5 for 100247536	vvi-u.5 for 100852794	vvi-u.5 for 100263503	ppo-u.5 for 7490325	ppo-u.5 for 7497594	ppo-u.5 for 7496695	mtr-u.5 for 25481987	mtr-u.5 for 25491446	mtr-u.5 for 25494361	sly-u.5 for fin1	sly-u.5 for 543925	sly-u.5 for 101264911	sot-r.1 for 102600287	sot-r.1 for 102580223	sot-r.1 for 102583083	nta-r.1 for 107787715	nta-r.1 for 107792882	nta-r.1 for 107790155	osa-u.5 for 4338816	osa-u.5 for 9269003	osa-u.5 for 4343868	zma-u.5 for 100216893	zma-u.5 for 100283842	zma-u.5 for 100193399	tae-r.2 for 123071781	tae-r.2 for 123062912	tae-r.2 for 123056239	hvu-r.1 for 123442808	hvu-r.1 for 123453008	hvu-r.1 for 123425355	sbi-r.1 for 8057052	sbi-r.1 for 8075860	sbi-r.1 for 8072592	bdi-r.1 for 100829192	bdi-r.1 for 100822053	bdi-r.1 for 100830499	cre-r.1 for CHLRE_07g357650v5	cre-r.1 for CHLRE_10g441050v5	cre-r.1 for CHLRE_07g320950v5

Ortholog

Ortholog ID: 163

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

AL2

AL3

AL7

FIN1

Function^*

PHD finger protein ALFIN-LIKE 2

PHD finger protein ALFIN-LIKE 6

PHD finger protein ALFIN-LIKE 4

PHD finger protein ALFIN-LIKE 6

PHD finger protein ALFIN-LIKE 3

alfin-like 2

alfin-like 3

alfin-like 7

PHD finger protein ALFIN-LIKE 7

PHD finger protein ALFIN-LIKE 4

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 5-like

PHD finger protein ALFIN-LIKE 1-like

PHD finger protein ALFIN-LIKE 4

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 2

PHD finger protein Alfin1

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 4

PHD finger protein Alfin1

PHD finger protein ALFIN-LIKE 4

putative alfin-like transcription factor

PHD finger protein ALFIN-LIKE 2

PHD finger protein ALFIN-LIKE 1-like

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 5-like

PHD finger protein ALFIN-LIKE 5

PHD finger protein ALFIN-LIKE 7-like

PHD finger protein ALFIN-LIKE 6-like

PHD finger protein ALFIN-LIKE 2-like

ALFIN-like transcription factor

uncharacterized LOC100192074

uncharacterized LOC100283422

PHD finger protein ALFIN-LIKE 9

PHD finger protein ALFIN-LIKE 3

PHD finger protein ALFIN-LIKE 8

PHD finger protein ALFIN-LIKE 9-like

PHD finger protein ALFIN-LIKE 2

PHD finger protein ALFIN-LIKE 8

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 8

PHD finger protein ALFIN-LIKE 6

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 2

PHD finger protein ALFIN-LIKE 6

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3
ath04141	Protein processing in endoplasmic reticulum	3
ath03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2
ath03015	mRNA surveillance pathway	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03040	Spliceosome	3
gma04382	Cornified envelope formation	2
gma03050	Proteasome	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	6
gma00020	Citrate cycle (TCA cycle)	3
gma01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00230	Purine metabolism	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01230	Biosynthesis of amino acids	3
sot00670	One carbon pool by folate	3
sot00260	Glycine, serine and threonine metabolism	2
sot00460	Cyanoamino acid metabolism	2
sot00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00564	Glycerophospholipid metabolism	2
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	4
sot04070	Phosphatidylinositol signaling system	4
sot04075	Plant hormone signal transduction	4
sot04626	Plant-pathogen interaction	4
sot04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4
tae00010	Glycolysis / Gluconeogenesis	3
tae00051	Fructose and mannose metabolism	3
tae00052	Galactose metabolism	3
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	3
tae03272	Virion - Hepatitis viruses	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03420	Nucleotide excision repair	3
sbi04141	Protein processing in endoplasmic reticulum	3
sbi04120	Ubiquitin mediated proteolysis	3
sbi03020	RNA polymerase	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	10
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2
cre03015	mRNA surveillance pathway	2
cre03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03015	mRNA surveillance pathway	3
cre04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04130	SNARE interactions in vesicular transport	2

Expression

Expression pattern

Entrez Gene ID^*

106452544

106365444

106348570

103827517

103848022

820290

823316

838013

107905795

107887134

107910658

102612029

102609956

102609983

100794662

100793126

100852794

100263503

100251933

7490325

18109476

7466074

25481987

25494361

25500530

101264911

101259267

101248299

102577447

102599199

102605058

107795748

107827993

107800878

9269003

4324896

4342784

100216893

100192074

100283422

123187982

123123460

123091217

123425355

123426080

123447832

8071208

8058123

110433568

100829192

100822053

100830499

5729202

5716151

5726584

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	2	3	3	3	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106439275 (bna-r.1 coexpression data)

Top 50 enrichment test to 106439275 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**