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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   NCED3   nine-cis-epoxycarotenoid dioxygenase 3 
 gma-u.5   100814399   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 gma-u.5   100777166   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 gma-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 vvi-u.5   100244362   9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic 
 vvi-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 vvi-u.5   NCED1   9-cis-epoxycarotenoid dioxygenase 1 
 ppo-u.5   7472358   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 ppo-u.5   18095516   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 mtr-u.5   120577706   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 mtr-u.5   25487063   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 sly-u.5   NCED1   9-cis-epoxycarotenoid dioxygenase 
 sly-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 osa-u.5   4333566   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 
 osa-u.5   9270250   9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 
 osa-u.5   4342424   9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 
 zma-u.5   100281391   uncharacterized LOC100281391 
 zma-u.5   100281136   uncharacterized LOC100281136 

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Top 50 coexpressed genes to NCED3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NCED3 (ath-u.5 coexpression data)

CoexMap"106442526"


bnaLOC106442526 | Entrez gene ID : 106442526    
Species ath gma vvi ppo mtr sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 1 3 3 2 2 2 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00906 [list] [network] Carotenoid biosynthesis (106 genes)
GO BP
GO:0016121 [list] [network] carotene catabolic process  (34 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (365 genes)  IEA  
GO MF
GO:0010436 [list] [network] carotenoid dioxygenase activity  (34 genes)  IEA  
Protein XP_048632806.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  plas 1,  cysk_plas 1  (predict for XP_048632806.1)
Subcellular
localization
TargetP
other 6  (predict for XP_048632806.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
NCED3
gma-u.5
for
100814399
gma-u.5
for
100777166
gma-u.5
for
NCED2
vvi-u.5
for
100244362
vvi-u.5
for
NCED2
vvi-u.5
for
NCED1
ppo-u.5
for
7472358
ppo-u.5
for
18095516
mtr-u.5
for
120577706
mtr-u.5
for
25487063
sly-u.5
for
NCED1
sly-u.5
for
NCED2
osa-u.5
for
4333566
osa-u.5
for
9270250
osa-u.5
for
4342424
zma-u.5
for
100281391
zma-u.5
for
100281136


Ortholog ID: 987
Species bna bra ghi ghi cit gma gma vvi vvi mtr mtr sly sot nta nta osa osa zma zma tae tae hvu hvu sbi bdi
Symbol LOC106423568 LOC103870025 LOC107914792 LOC107909170 NCED LOC100814399 NCED2 LOC100244362 NCED1 LOC120577706 LOC25487063 NCED1 LOC102577733 LOC107814412 LOC107822968 LOC4342424 LOC9270250 LOC103648268 LOC100281391 LOC123122716 LOC123110233 LOC123395880 LOC123452108 LOC8062208 LOC100822305
Function* 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic putative 9-cis-epoxycarotenoid dioxygenase 3 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase 2 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic 9-cis-epoxycarotenoid dioxygenase 1 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase 9-cis-epoxy-carotenoid dioxygenase 2 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic uncharacterized LOC100281391 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 5
bra04075 Plant hormone signal transduction 5
bra00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 6
ghi04075 Plant hormone signal transduction 6
ghi04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 5
ghi00908 Zeatin biosynthesis 4
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 3
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
gma00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 5
vvi04075 Plant hormone signal transduction 5
vvi00906 Carotenoid biosynthesis 4
vvi00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
mtr04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 6
sly04016 MAPK signaling pathway - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 4
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 4
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 5
zma04016 MAPK signaling pathway - plant 3
zma04075 Plant hormone signal transduction 3
zma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 6
zma04016 MAPK signaling pathway - plant 5
zma04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 9
tae04016 MAPK signaling pathway - plant 6
tae04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04016 MAPK signaling pathway - plant 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 3
sbi04075 Plant hormone signal transduction 3
sbi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 7
bdi04016 MAPK signaling pathway - plant 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106423568 103870025 107914792 107909170 102578064 100814399 100797882 100244362 100232942 120577706 25487063 544163 102577733 107814412 107822968 4342424 9270250 103648268 100281391 123122716 123110233 123395880 123452108 8062208 100822305
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