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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106444883   peptide chain release factor APG3, chloroplastic-like 
 ath-u.5   APG3   Peptide chain release factor 1 
 gma-u.5   100805037   peptide chain release factor APG3, chloroplastic 
 gma-u.5   100777225   peptide chain release factor APG3, chloroplastic 
 vvi-u.5   100247720   peptide chain release factor APG3, chloroplastic 
 ppo-u.5   7457960   peptide chain release factor APG3, chloroplastic 
 mtr-u.5   11430689   peptide chain release factor APG3, chloroplastic 
 sly-u.5   101256123   peptide chain release factor APG3, chloroplastic 
 osa-u.5   4351050   peptide chain release factor APG3, chloroplastic 
 zma-u.5   100279745   uncharacterized LOC100279745 

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Top 50 coexpressed genes to 106444883 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106444883 (bna-r.1 coexpression data)

CoexMap"106444883"


bnaLOC106444883 | Entrez gene ID : 106444883    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032544 [list] [network] plastid translation  (16 genes)  IEA  
GO:0010027 [list] [network] thylakoid membrane organization  (39 genes)  IEA  
GO:0006415 [list] [network] translational termination  (46 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (193 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1821 genes)  IEA  
GO MF
GO:0016149 [list] [network] translation release factor activity, codon specific  (18 genes)  IEA  
Protein XP_013741761.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_013741761.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_013741761.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106444883

.
ath-u.5
for
APG3

.
gma-u.5
for
100805037

.
gma-u.5
for
100777225

.
vvi-u.5
for
100247720

.
ppo-u.5
for
7457960

.
mtr-u.5
for
11430689

.
sly-u.5
for
101256123

.
osa-u.5
for
4351050

.
zma-u.5
for
100279745

.


Ortholog ID: 8521
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol APG3 LOC100777225 LOC100805037 LOC101256123 LOC4351050 LOC100279745 LOC103842096 LOC103862767 LOC100247720 LOC7457960 LOC11430689 LOC123176461 LOC123096887 LOC123448398 LOC107947962 LOC121203152 LOC106420483 LOC106444883 CHLRE_16g673617v5 LOC8070177 LOC102578153 LOC102610080 LOC100835769 LOC107822849 LOC107819874
Function* Peptide chain release factor 1 peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic uncharacterized LOC100279745 peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic-like peptide chain release factor APG3, chloroplastic-like uncharacterized protein peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma00740 Riboflavin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 3
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 5
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 5
tae00906 Carotenoid biosynthesis 3
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot03060 Protein export 2
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
bdi03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825466 100777225 100805037 101256123 4351050 100279745 103842096 103862767 100247720 7457960 11430689 123176461 123096887 123448398 107947962 121203152 106420483 106444883 5721375 8070177 102578153 102610080 100835769 107822849 107819874
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