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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106445587   replication factor C subunit 3-like 
 ath-u.5   EMB2775   ATPase family associated with various cellular activities (AAA) 
 gma-u.5   100818329   replication factor C subunit 3-like 
 gma-u.5   100807039   replication factor C subunit 3 
 vvi-u.5   100247946   replication factor C subunit 3 
 ppo-u.5   7491062   replication factor C subunit 3 
 mtr-u.5   25497284   replication factor C subunit 3 
 mtr-u.5   25495823   replication factor C subunit 3 
 sly-u.5   101253010   replication factor C subunit 3 
 osa-u.5   4334389   replication factor C subunit 5-like 
 zma-u.5   103625817   replication factor C subunit 5 
 zma-u.5   100193357   uncharacterized LOC100193357 

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Top 50 coexpressed genes to 106445587 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106445587 (bna-r.1 coexpression data)

CoexMap"106445587"


bnaLOC106445587 | Entrez gene ID : 106445587    
Species bna ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit ghi bdi sbi cre
Paralog 1 1 2 1 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03030 [list] [network] DNA replication (118 genes)
bna03410 [list] [network] Base excision repair (126 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
bna03430 [list] [network] Mismatch repair (77 genes)
GO BP
GO:0006261 [list] [network] DNA-templated DNA replication  (215 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (1192 genes)  IEA  
GO CC
GO:0005663 [list] [network] DNA replication factor C complex  (32 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0003689 [list] [network] DNA clamp loader activity  (32 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (1360 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_048601944.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  mito 1,  E.R. 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_048601944.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_048601944.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106445587

.
ath-u.5
for
EMB2775

.
gma-u.5
for
100818329

.
gma-u.5
for
100807039

.
vvi-u.5
for
100247946

.
ppo-u.5
for
7491062

.
mtr-u.5
for
25497284

.
mtr-u.5
for
25495823

.
sly-u.5
for
101253010

.
osa-u.5
for
4334389

.
zma-u.5
for
103625817

.
zma-u.5
for
100193357

.


Ortholog ID: 6660
Species ath gma gma sly osa zma zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol EMB2775 LOC100807039 LOC100818329 LOC101253010 LOC4334389 LOC100193357 LOC103625817 LOC103854671 LOC103874514 LOC100247946 LOC7491062 LOC25495823 LOC25497284 LOC123105353 LOC123113618 LOC123452629 LOC107891200 LOC121212533 LOC106445587 LOC111203402 CHLRE_16g679950v5 LOC110434126 LOC102603953 LOC102615422 LOC100837911 LOC107830832 LOC107797733
Function* ATPase family associated with various cellular activities (AAA) replication factor C subunit 3 replication factor C subunit 3-like replication factor C subunit 3 replication factor C subunit 5-like uncharacterized LOC100193357 replication factor C subunit 5 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3-like replication factor C subunit 3-like uncharacterized protein replication factor C subunit 5 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 5 replication factor C subunit 3 replication factor C subunit 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 6
ath03030 DNA replication 5
ath03420 Nucleotide excision repair 5
ath03430 Mismatch repair 5
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 4
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03410 Base excision repair 3
sly03010 Ribosome 2
sly03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 5
osa03410 Base excision repair 5
osa03420 Nucleotide excision repair 5
osa03430 Mismatch repair 4
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03430 Mismatch repair 3
zma03420 Nucleotide excision repair 3
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
zma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03430 Mismatch repair 6
zma03030 DNA replication 5
zma03410 Base excision repair 4
zma03420 Nucleotide excision repair 4
zma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03040 Spliceosome 3
bra03430 Mismatch repair 3
bra03440 Homologous recombination 2
bra03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03430 Mismatch repair 5
vvi03030 DNA replication 4
vvi03420 Nucleotide excision repair 4
vvi03410 Base excision repair 2
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
ppo03030 DNA replication 4
ppo03410 Base excision repair 3
ppo03420 Nucleotide excision repair 3
ppo03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr03030 DNA replication 2
mtr03410 Base excision repair 2
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 5
mtr03030 DNA replication 2
mtr03410 Base excision repair 2
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
tae03410 Base excision repair 7
tae03420 Nucleotide excision repair 7
tae03430 Mismatch repair 7
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 6
tae03410 Base excision repair 6
tae03420 Nucleotide excision repair 6
tae03430 Mismatch repair 6
tae03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03420 Nucleotide excision repair 9
ghi03430 Mismatch repair 9
ghi03410 Base excision repair 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 4
ghi03410 Base excision repair 4
ghi03420 Nucleotide excision repair 4
ghi03430 Mismatch repair 4
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 5
bna03410 Base excision repair 5
bna03420 Nucleotide excision repair 5
bna03430 Mismatch repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 5
bna03410 Base excision repair 5
bna03420 Nucleotide excision repair 5
bna03430 Mismatch repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 9
cre03410 Base excision repair 6
cre03420 Nucleotide excision repair 6
cre03430 Mismatch repair 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 4
sbi03410 Base excision repair 4
sbi03420 Nucleotide excision repair 4
sbi03430 Mismatch repair 4
sbi03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 3
bdi03430 Mismatch repair 3
bdi03410 Base excision repair 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832836 100807039 100818329 101253010 4334389 100193357 103625817 103854671 103874514 100247946 7491062 25495823 25497284 123105353 123113618 123452629 107891200 121212533 106445587 111203402 5721546 110434126 102603953 102615422 100837911 107830832 107797733
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