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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106447084   protein RRP6-like 3 
 bna-r.1   106427697   protein RRP6-like 3 
 bna-r.1   106453576   protein RRP6-like 3 
 bra-r.6   103865199   protein RRP6-like 3 
 ath-u.5   AT2G32415   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 
 ghi-r.1   121228313   protein RRP6-like 3 
 ghi-r.1   107898747   protein RRP6-like 3 
 cit-r.1   102608683   protein RRP6-like 3 
 gma-u.5   100791485   protein RRP6-like 3 
 vvi-u.5   100261955   protein RRP6-like 3 
 ppo-u.5   18103732   protein RRP6-like 3 
 mtr-u.5   11445200   protein RRP6-like 3 
 sly-u.5   101254313   protein RRP6-like 3 
 sot-r.1   102587156   protein RRP6-like 3 
 nta-r.1   107809017   protein RRP6-like 3 
 nta-r.1   107759560   protein RRP6-like 3 
 osa-u.5   107275761   protein RRP6-like 3 
 zma-u.5   103633224   Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 
 tae-r.2   123188444   protein RRP6-like 3 
 tae-r.2   123052556   protein RRP6-like 3 
 tae-r.2   123044693   protein RRP6-like 3 
 hvu-r.1   123425908   protein RRP6-like 3 
 sbi-r.1   8080744   protein RRP6-like 3 
 bdi-r.1   100837522   protein RRP6-like 3 
 cre-r.1   CHLRE_03g145767v5   uncharacterized protein 

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Top 50 coexpressed genes to 106447084 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106447084 (bna-r.1 coexpression data)

CoexMap"106447084"


bnaLOC106447084 | Entrez gene ID : 106447084    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0071036 [list] [network] nuclear polyadenylation-dependent snoRNA catabolic process  (10 genes)  IEA  
GO:0071037 [list] [network] nuclear polyadenylation-dependent snRNA catabolic process  (10 genes)  IEA  
GO:0071039 [list] [network] nuclear polyadenylation-dependent CUT catabolic process  (10 genes)  IEA  
GO:0071040 [list] [network] nuclear polyadenylation-dependent antisense transcript catabolic process  (10 genes)  IEA  
GO:0071044 [list] [network] histone mRNA catabolic process  (10 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (25 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (25 genes)  IEA  
GO:0071051 [list] [network] poly(A)-dependent snoRNA 3'-end processing  (25 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (27 genes)  IEA  
GO:0006265 [list] [network] DNA topological change  (41 genes)  IEA  
GO CC
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (40 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (615 genes)  IEA  
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (96 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (1590 genes)  IEA  
GO:0000166 [list] [network] nucleotide binding  (8037 genes)  IEA  
Protein XP_013744393.3 [sequence] [blastp]
XP_013744394.3 [sequence] [blastp]
XP_022548425.2 [sequence] [blastp]
XP_048634356.1 [sequence] [blastp]
XP_048634357.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 3,  plas 1,  extr 1,  vacu 1  (predict for XP_013744393.3)
chlo 6,  nucl 2,  plas 1,  extr 1,  vacu 1  (predict for XP_013744394.3)
chlo 5,  nucl 3,  plas 1,  extr 1,  vacu 1  (predict for XP_022548425.2)
chlo 5,  nucl 3,  plas 1,  extr 1,  vacu 1  (predict for XP_048634356.1)
chlo 5,  nucl 3,  plas 1,  extr 1,  vacu 1  (predict for XP_048634357.1)
Subcellular
localization
TargetP
mito 3  (predict for XP_013744393.3)
mito 3  (predict for XP_013744394.3)
mito 3  (predict for XP_022548425.2)
mito 3  (predict for XP_048634356.1)
mito 3  (predict for XP_048634357.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106447084
bna-r.1
for
106427697
bna-r.1
for
106453576
bra-r.6
for
103865199
ath-u.5
for
AT2G32415
ghi-r.1
for
121228313
ghi-r.1
for
107898747
cit-r.1
for
102608683
gma-u.5
for
100791485
vvi-u.5
for
100261955
ppo-u.5
for
18103732
mtr-u.5
for
11445200
sly-u.5
for
101254313
sot-r.1
for
102587156
nta-r.1
for
107809017
nta-r.1
for
107759560
osa-u.5
for
107275761
zma-u.5
for
103633224
tae-r.2
for
123188444
tae-r.2
for
123052556
tae-r.2
for
123044693
hvu-r.1
for
123425908
sbi-r.1
for
8080744
bdi-r.1
for
100837522
cre-r.1
for
CHLRE_03g145767v5


Ortholog ID: 9411
Species bna bna bna bra ath ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106447084 LOC106427697 LOC106453576 LOC103865199 AT2G32415 LOC121228313 LOC107898747 LOC102608683 LOC100791485 LOC100261955 LOC18103732 LOC11445200 LOC101254313 LOC102587156 LOC107809017 LOC107759560 LOC107275761 LOC103633224 LOC123188444 LOC123052556 LOC123044693 LOC123425908 LOC8080744 LOC100837522 CHLRE_03g145767v5
Function* protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 protein RRP6-like 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03018 RNA degradation 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 3
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106447084 106427697 106453576 103865199 817803 121228313 107898747 102608683 100791485 100261955 18103732 11445200 101254313 102587156 107809017 107759560 107275761 103633224 123188444 123052556 123044693 123425908 8080744 100837522 5721247
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