ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106450696	uncharacterized LOC106450696
bra-r.6	103872241	uncharacterized LOC103872241
bra-r.6	103841540	uncharacterized LOC103841540
ath-u.5	AT2G40520	Nucleotidyltransferase family protein
ath-u.5	AT3G51620	PAP/OAS1 substrate-binding domain superfamily
ath-u.5	AT3G56320	PAP/OAS1 substrate-binding domain superfamily
ghi-r.1	107935962	uncharacterized LOC107935962
ghi-r.1	107962375	protein HESO1
ghi-r.1	107937698	uncharacterized LOC107937698
cit-r.1	102618267	uncharacterized LOC102618267
cit-r.1	102622468	uncharacterized LOC102622468
gma-u.5	100787145	uncharacterized LOC100787145
gma-u.5	100797780	uncharacterized LOC100797780
vvi-u.5	100258499	uncharacterized LOC100258499
vvi-u.5	100253615	uncharacterized LOC100253615
vvi-u.5	100253523	uncharacterized LOC100253523
ppo-u.5	7465162	uncharacterized LOC7465162
ppo-u.5	18108317	uncharacterized LOC18108317
ppo-u.5	18108659	uncharacterized LOC18108659
mtr-u.5	11434409	uncharacterized LOC11434409
mtr-u.5	25489845	uncharacterized LOC25489845
mtr-u.5	25489842	uncharacterized LOC25489842
sly-u.5	101256025	uncharacterized LOC101256025
sly-u.5	101246260	uncharacterized LOC101246260
sot-r.1	102589320	uncharacterized LOC102589320
sot-r.1	102602843	uncharacterized LOC102602843
nta-r.1	107830201	uncharacterized LOC107830201
nta-r.1	107789722	uncharacterized LOC107789722
nta-r.1	107798277	uncharacterized LOC107798277
osa-u.5	4349599	uncharacterized LOC4349599
osa-u.5	4351312	uncharacterized LOC4351312
zma-u.5	100381756	uncharacterized LOC100381756
zma-u.5	100273722	uncharacterized LOC100273722
zma-u.5	103651679	PAP/OAS1 substrate-binding domain superfamily
tae-r.2	123086466	uncharacterized LOC123086466
tae-r.2	123091528	uncharacterized LOC123091528
tae-r.2	123096486	uncharacterized LOC123096486
hvu-r.1	123399781	uncharacterized LOC123399781
hvu-r.1	123448065	uncharacterized LOC123448065
sbi-r.1	8067612	uncharacterized LOC8067612
sbi-r.1	8067188	protein HESO1
bdi-r.1	100826374	uncharacterized LOC100826374
bdi-r.1	100840351	protein HESO1
cre-r.1	CHLRE_12g552650v5	uncharacterized protein

Top 50 coexpressed genes to 106450696 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106450696 (bna-r.1 coexpression data)

CoexMap"106449202"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0016779 [list] [network] nucleotidyltransferase activity

(381 genes)

IEA

Protein

XP_013746452.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 1, vacu 1, mito 1, plas 1, extr 1, golg 1, cyto_nucl 1, cysk_nucl 1, golg_plas 1, E.R._vacu 1, mito_plas 1

(predict for XP_013746452.2)

Subcellular
localization
TargetP

chlo 4

(predict for XP_013746452.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106450696	bra-r.6 for 103872241	bra-r.6 for 103841540	ath-u.5 for AT2G40520	ath-u.5 for AT3G51620	ath-u.5 for AT3G56320	ghi-r.1 for 107935962	ghi-r.1 for 107962375	ghi-r.1 for 107937698	cit-r.1 for 102618267	cit-r.1 for 102622468	gma-u.5 for 100787145	gma-u.5 for 100797780	vvi-u.5 for 100258499	vvi-u.5 for 100253615	vvi-u.5 for 100253523	ppo-u.5 for 7465162	ppo-u.5 for 18108317	ppo-u.5 for 18108659	mtr-u.5 for 11434409	mtr-u.5 for 25489845	mtr-u.5 for 25489842	sly-u.5 for 101256025	sly-u.5 for 101246260	sot-r.1 for 102589320	sot-r.1 for 102602843	nta-r.1 for 107830201	nta-r.1 for 107789722	nta-r.1 for 107798277	osa-u.5 for 4349599	osa-u.5 for 4351312	zma-u.5 for 100381756	zma-u.5 for 100273722	zma-u.5 for 103651679	tae-r.2 for 123086466	tae-r.2 for 123091528	tae-r.2 for 123096486	hvu-r.1 for 123399781	hvu-r.1 for 123448065	sbi-r.1 for 8067612	sbi-r.1 for 8067188	bdi-r.1 for 100826374	bdi-r.1 for 100840351	cre-r.1 for CHLRE_12g552650v5

Ortholog

Ortholog ID: 1572

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC106450696

uncharacterized LOC106349056

uncharacterized LOC103841540

uncharacterized LOC103866508

Nucleotidyltransferase family protein

PAP/OAS1 substrate-binding domain superfamily

protein HESO1

uncharacterized LOC107937698

uncharacterized LOC107903624

uncharacterized LOC102618267

uncharacterized LOC102622468

uncharacterized LOC100797780

uncharacterized LOC100814626

uncharacterized LOC100258499

uncharacterized LOC100253615

uncharacterized LOC100253523

uncharacterized LOC7465162

uncharacterized LOC18108317

uncharacterized LOC18108659

uncharacterized LOC11434409

uncharacterized LOC25489845

uncharacterized LOC25489842

uncharacterized LOC101256025

uncharacterized LOC101246260

uncharacterized LOC102589320

uncharacterized LOC102602843

uncharacterized LOC107798277

uncharacterized LOC107799056

uncharacterized LOC107820077

uncharacterized LOC4349599

uncharacterized LOC4351312

uncharacterized LOC100381756

uncharacterized LOC100273722

PAP/OAS1 substrate-binding domain superfamily

uncharacterized LOC123086466

uncharacterized LOC123091528

uncharacterized LOC123096486

uncharacterized LOC123399781

uncharacterized LOC123448065

uncharacterized LOC8067612

protein HESO1

uncharacterized LOC100826374

protein HESO1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00330	Arginine and proline metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	3
bna03018	RNA degradation	2
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00010	Glycolysis / Gluconeogenesis	2
bra00260	Glycine, serine and threonine metabolism	2
bra01200	Carbon metabolism	2
bra01230	Biosynthesis of amino acids	2
bra00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03450	Non-homologous end-joining	2
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	3
cit00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
cit01240	Biosynthesis of cofactors	2
cit03040	Spliceosome	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00250	Alanine, aspartate and glutamate metabolism	2
vvi00500	Starch and sucrose metabolism	2
vvi00561	Glycerolipid metabolism	2
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3
ppo03083	Polycomb repressive complex	2
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00230	Purine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot01232	Nucleotide metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	4
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2
nta03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	8
nta04075	Plant hormone signal transduction	6
nta00730	Thiamine metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	4
nta00561	Glycerolipid metabolism	4
nta00564	Glycerophospholipid metabolism	4
nta00565	Ether lipid metabolism	4
nta00590	Arachidonic acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	3
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3
tae04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	4
tae04075	Plant hormone signal transduction	3
tae03083	Polycomb repressive complex	2
tae03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00514	Other types of O-glycan biosynthesis	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2
cre03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

106450696

106349056

103841540

103866508

818647

824325

824799

107962375

107937698

107903624

102618267

102622468

100797780

100814626

100258499

100253615

100253523

7465162

18108317

18108659

11434409

25489845

25489842

101256025

101246260

102589320

102602843

107798277

107799056

107820077

4349599

4351312

100381756

100273722

103651679

123086466

123091528

123096486

123399781

123448065

8067612

8067188

100826374

100840351

5719689

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Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	1	2	3	3	2	2	3	3	3	2	2	3	2	3	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106450696 (bna-r.1 coexpression data)

Top 50 enrichment test to 106450696 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**