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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106450001   DNA-directed RNA polymerases II, IV and V subunit 3-like 
 ath-u.5   NRPE3B   DNA-directed RNA polymerase family protein 
 ath-u.5   NRPB3   DNA-directed RNA polymerase family protein 
 gma-u.5   100792565   DNA-directed RNA polymerases II, IV and V subunit 3 
 gma-u.5   100779047   DNA-directed RNA polymerases II, IV and V subunit 3 
 vvi-u.5   100258926   DNA-directed RNA polymerases II, IV and V subunit 3 
 ppo-u.5   7490057   DNA-directed RNA polymerases II, IV and V subunit 3 
 mtr-u.5   11444055   DNA-directed RNA polymerases II, IV and V subunit 3 
 sly-u.5   101248675   DNA-directed RNA polymerases II, IV and V subunit 3 
 osa-u.5   4346392   DNA-directed RNA polymerases II, IV and V subunit 3 
 zma-u.5   100282883   uncharacterized LOC100282883 

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Top 50 coexpressed genes to 106450001 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106450001 (bna-r.1 coexpression data)

CoexMap"106450001"


bnaLOC106450001 | Entrez gene ID : 106450001    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (76 genes)  IEA  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (117 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1531 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_013747109.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  pero 1  (predict for XP_013747109.2)
Subcellular
localization
TargetP
other 9  (predict for XP_013747109.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106450001
ath-u.5
for
NRPE3B
ath-u.5
for
NRPB3
gma-u.5
for
100792565
gma-u.5
for
100779047
vvi-u.5
for
100258926
ppo-u.5
for
7490057
mtr-u.5
for
11444055
sly-u.5
for
101248675
osa-u.5
for
4346392
zma-u.5
for
100282883


Ortholog ID: 5943
Species bna bna bra bra ath ath ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC106445647 LOC106450001 LOC103844364 LOC103847993 NRPE3B NRPB3 LOC107922611 LOC107945141 LOC102612811 LOC100779047 LOC100792565 LOC100258926 LOC7490057 LOC11444055 LOC101248675 LOC102598724 LOC107789704 LOC107832026 LOC4346392 LOC100282883 LOC123120651 LOC123111478 LOC123399713 LOC8063422 LOC100833824 CHLRE_10g419750v5
Function* DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3-like DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerase family protein DNA-directed RNA polymerase family protein DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3-like DNA-directed RNA polymerases II, IV and V subunit 3-like DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 uncharacterized LOC100282883 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3-like DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
bra00970 Aminoacyl-tRNA biosynthesis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
ghi03420 Nucleotide excision repair 6
ghi04075 Plant hormone signal transduction 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
ghi03420 Nucleotide excision repair 6
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 3
cit03420 Nucleotide excision repair 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 4
vvi03015 mRNA surveillance pathway 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo03010 Ribosome 3
ppo03082 ATP-dependent chromatin remodeling 2
ppo03015 mRNA surveillance pathway 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 4
mtr03040 Spliceosome 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 3
osa03015 mRNA surveillance pathway 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03040 Spliceosome 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106445647 106450001 103844364 103847993 816032 816035 107922611 107945141 102612811 100779047 100792565 100258926 7490057 11444055 101248675 102598724 107789704 107832026 4346392 100282883 123120651 123111478 123399713 8063422 100833824 5728298
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