ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106450752	transketolase-2, chloroplastic
bna-r.1	106414826	transketolase-1, chloroplastic-like
bna-r.1	106350063	transketolase-1, chloroplastic
bna-r.1	106414846	transketolase-1, chloroplastic-like
bra-r.6	103841917	transketolase-1, chloroplastic
bra-r.6	103862864	transketolase-1, chloroplastic
ath-u.5	AT2G45290	Transketolase
ath-u.5	AT3G60750	Transketolase
ghi-r.1	107911586	transketolase, chloroplastic
ghi-r.1	107941756	transketolase, chloroplastic
ghi-r.1	107945612	transketolase, chloroplastic
cit-r.1	102622121	transketolase, chloroplastic
gma-u.5	100818028	transketolase, chloroplastic
gma-u.5	100805786	transketolase, chloroplastic
gma-u.5	100781676	transketolase, chloroplastic
vvi-u.5	100248004	transketolase, chloroplastic
vvi-u.5	100262551	transketolase, chloroplastic
ppo-u.5	7453964	transketolase, chloroplastic
ppo-u.5	18105204	transketolase, chloroplastic
mtr-u.5	11424367	transketolase, chloroplastic
mtr-u.5	11423341	transketolase, chloroplastic
sly-u.5	101245299	transketolase, chloroplastic
sly-u.5	101251315	transketolase, chloroplastic-like
sly-u.5	101265735	transketolase, chloroplastic-like
sot-r.1	102588555	transketolase, chloroplastic-like
sot-r.1	TK	transketolase
sot-r.1	102603108	transketolase, chloroplastic-like
nta-r.1	107797391	transketolase, chloroplastic
osa-u.5	4340025	transketolase, chloroplastic
osa-u.5	4335330	transketolase, chloroplastic
zma-u.5	103646666	transketolase, chloroplastic-like
zma-u.5	103640190	transketolase, chloroplastic
zma-u.5	100279513	uncharacterized LOC100279513
tae-r.2	123150036	transketolase, chloroplastic
tae-r.2	123088174	transketolase, chloroplastic
tae-r.2	123051323	transketolase, chloroplastic
hvu-r.1	123429329	transketolase, chloroplastic-like
hvu-r.1	123411953	transketolase, chloroplastic
sbi-r.1	8085774	transketolase, chloroplastic
sbi-r.1	8069074	transketolase, chloroplastic
sbi-r.1	8072707	transketolase, chloroplastic
bdi-r.1	100841910	transketolase, chloroplastic
bdi-r.1	100837200	transketolase, chloroplastic
cre-r.1	CHLRE_02g080200v5	uncharacterized protein

Top 50 coexpressed genes to 106450752 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106450752 (bna-r.1 coexpression data)

CoexMap"106450752"

[Cytoscape]

Annotation

functional annotation

KEGG

bna00030 [list] [network] Pentose phosphate pathway (169 genes)

bna00710 [list] [network] Carbon fixation by Calvin cycle (246 genes)

bna01200 [list] [network] Carbon metabolism (888 genes)

bna01230 [list] [network] Biosynthesis of amino acids (773 genes)

GO BP

GO:0006098 [list] [network] pentose-phosphate shunt

(75 genes)

IEA

GO CC

GO:0005829 [list] [network] cytosol

(3196 genes)

IEA

GO MF

GO:0004802 [list] [network] transketolase activity

(8 genes)

IEA

Protein

XP_013747945.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for XP_013747945.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_013747945.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106450752	bna-r.1 for 106414826	bna-r.1 for 106350063	bna-r.1 for 106414846	bra-r.6 for 103841917	bra-r.6 for 103862864	ath-u.5 for AT2G45290	ath-u.5 for AT3G60750	ghi-r.1 for 107911586	ghi-r.1 for 107941756	ghi-r.1 for 107945612	cit-r.1 for 102622121	gma-u.5 for 100818028	gma-u.5 for 100805786	gma-u.5 for 100781676	vvi-u.5 for 100248004	vvi-u.5 for 100262551	ppo-u.5 for 7453964	ppo-u.5 for 18105204	mtr-u.5 for 11424367	mtr-u.5 for 11423341	sly-u.5 for 101245299	sly-u.5 for 101251315	sly-u.5 for 101265735	sot-r.1 for 102588555	sot-r.1 for TK	sot-r.1 for 102603108	nta-r.1 for 107797391	osa-u.5 for 4340025	osa-u.5 for 4335330	zma-u.5 for 103646666	zma-u.5 for 103640190	zma-u.5 for 100279513	tae-r.2 for 123150036	tae-r.2 for 123088174	tae-r.2 for 123051323	hvu-r.1 for 123429329	hvu-r.1 for 123411953	sbi-r.1 for 8085774	sbi-r.1 for 8069074	sbi-r.1 for 8072707	bdi-r.1 for 100841910	bdi-r.1 for 100837200	cre-r.1 for CHLRE_02g080200v5

Ortholog

Ortholog ID: 2545

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

transketolase-2, chloroplastic

transketolase-1, chloroplastic-like

transketolase-2, chloroplastic

transketolase-1, chloroplastic

Transketolase

transketolase, chloroplastic

transketolase, chloroplastic-like

transketolase

transketolase, chloroplastic-like

transketolase, chloroplastic

transketolase, chloroplastic-like

transketolase, chloroplastic

uncharacterized LOC100279513

transketolase, chloroplastic

transketolase, chloroplastic-like

transketolase, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	8
bna00030	Pentose phosphate pathway	6
bna00710	Carbon fixation by Calvin cycle	6
bna01230	Biosynthesis of amino acids	6
bna01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	10
bna00030	Pentose phosphate pathway	6
bna00710	Carbon fixation by Calvin cycle	6
bna01230	Biosynthesis of amino acids	6
bna00010	Glycolysis / Gluconeogenesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	8
bna00030	Pentose phosphate pathway	6
bna00710	Carbon fixation by Calvin cycle	6
bna01230	Biosynthesis of amino acids	6
bna01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	11
bra01230	Biosynthesis of amino acids	9
bra00710	Carbon fixation by Calvin cycle	7
bra00630	Glyoxylate and dicarboxylate metabolism	5
bra00010	Glycolysis / Gluconeogenesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	8
bra00030	Pentose phosphate pathway	5
bra00010	Glycolysis / Gluconeogenesis	4
bra00260	Glycine, serine and threonine metabolism	3
bra00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	6
ath01200	Carbon metabolism	4
ath00030	Pentose phosphate pathway	3
ath00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
ath01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	10
ath01230	Biosynthesis of amino acids	7
ath00010	Glycolysis / Gluconeogenesis	6
ath00620	Pyruvate metabolism	4
ath01210	2-Oxocarboxylic acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00030	Pentose phosphate pathway	7
ghi00710	Carbon fixation by Calvin cycle	7
ghi01200	Carbon metabolism	7
ghi01230	Biosynthesis of amino acids	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00030	Pentose phosphate pathway	7
ghi00710	Carbon fixation by Calvin cycle	7
ghi01200	Carbon metabolism	7
ghi01230	Biosynthesis of amino acids	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00030	Pentose phosphate pathway	7
ghi00710	Carbon fixation by Calvin cycle	7
ghi01200	Carbon metabolism	7
ghi01230	Biosynthesis of amino acids	7
ghi00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00030	Pentose phosphate pathway	2
cit00710	Carbon fixation by Calvin cycle	2
cit01200	Carbon metabolism	2
cit01230	Biosynthesis of amino acids	2
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	16
gma01230	Biosynthesis of amino acids	11
gma00030	Pentose phosphate pathway	9
gma00710	Carbon fixation by Calvin cycle	8
gma00010	Glycolysis / Gluconeogenesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	9
gma00710	Carbon fixation by Calvin cycle	8
gma00030	Pentose phosphate pathway	3
gma00195	Photosynthesis	3
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	11
gma00710	Carbon fixation by Calvin cycle	9
gma00630	Glyoxylate and dicarboxylate metabolism	4
gma00030	Pentose phosphate pathway	3
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00860	Porphyrin metabolism	3
vvi01240	Biosynthesis of cofactors	3
vvi01200	Carbon metabolism	3
vvi01230	Biosynthesis of amino acids	3
vvi00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00940	Phenylpropanoid biosynthesis	3
vvi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	9
ppo00710	Carbon fixation by Calvin cycle	6
ppo01230	Biosynthesis of amino acids	6
ppo00030	Pentose phosphate pathway	4
ppo00670	One carbon pool by folate	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00670	One carbon pool by folate	8
ppo01230	Biosynthesis of amino acids	8
ppo01200	Carbon metabolism	7
ppo00270	Cysteine and methionine metabolism	6
ppo00260	Glycine, serine and threonine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	9
mtr01200	Carbon metabolism	8
mtr00010	Glycolysis / Gluconeogenesis	4
mtr00030	Pentose phosphate pathway	4
mtr01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr01200	Carbon metabolism	3
mtr00190	Oxidative phosphorylation	2
mtr00195	Photosynthesis	2
mtr00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	9
sly00710	Carbon fixation by Calvin cycle	7
sly00195	Photosynthesis	6
sly00630	Glyoxylate and dicarboxylate metabolism	3
sly00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	9
sly01230	Biosynthesis of amino acids	6
sly00190	Oxidative phosphorylation	6
sly00710	Carbon fixation by Calvin cycle	5
sly00020	Citrate cycle (TCA cycle)	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	7
sot01230	Biosynthesis of amino acids	7
sot00010	Glycolysis / Gluconeogenesis	4
sot00030	Pentose phosphate pathway	4
sot00710	Carbon fixation by Calvin cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	7
sot01230	Biosynthesis of amino acids	7
sot00710	Carbon fixation by Calvin cycle	6
sot00010	Glycolysis / Gluconeogenesis	4
sot00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01230	Biosynthesis of amino acids	8
nta01200	Carbon metabolism	7
nta00030	Pentose phosphate pathway	5
nta00710	Carbon fixation by Calvin cycle	5
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00030	Pentose phosphate pathway	4
nta01200	Carbon metabolism	4
nta01230	Biosynthesis of amino acids	4
nta00710	Carbon fixation by Calvin cycle	3
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	7
osa01230	Biosynthesis of amino acids	6
osa00710	Carbon fixation by Calvin cycle	5
osa00630	Glyoxylate and dicarboxylate metabolism	4
osa00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00010	Glycolysis / Gluconeogenesis	6
osa01200	Carbon metabolism	6
osa01230	Biosynthesis of amino acids	4
osa00710	Carbon fixation by Calvin cycle	3
osa00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	5
zma04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	4
zma00710	Carbon fixation by Calvin cycle	4
zma01200	Carbon metabolism	4
zma00030	Pentose phosphate pathway	3
zma01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00710	Carbon fixation by Calvin cycle	7
zma01200	Carbon metabolism	7
zma01230	Biosynthesis of amino acids	6
zma00010	Glycolysis / Gluconeogenesis	5
zma01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01230	Biosynthesis of amino acids	12
tae01200	Carbon metabolism	11
tae00710	Carbon fixation by Calvin cycle	8
tae00920	Sulfur metabolism	6
tae01320	Sulfur cycle	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01230	Biosynthesis of amino acids	11
tae01200	Carbon metabolism	7
tae00710	Carbon fixation by Calvin cycle	6
tae00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
tae00030	Pentose phosphate pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	3
hvu00195	Photosynthesis	2
hvu00010	Glycolysis / Gluconeogenesis	2
hvu00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	4
sbi01230	Biosynthesis of amino acids	4
sbi04016	MAPK signaling pathway - plant	3
sbi04075	Plant hormone signal transduction	3
sbi00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	10
sbi00785	Lipoic acid metabolism	5
sbi00030	Pentose phosphate pathway	5
sbi00010	Glycolysis / Gluconeogenesis	4
sbi00020	Citrate cycle (TCA cycle)	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00030	Pentose phosphate pathway	4
sbi00710	Carbon fixation by Calvin cycle	4
sbi01200	Carbon metabolism	4
sbi01230	Biosynthesis of amino acids	4
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	7
bdi00710	Carbon fixation by Calvin cycle	5
bdi01230	Biosynthesis of amino acids	5
bdi00030	Pentose phosphate pathway	3
bdi00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00710	Carbon fixation by Calvin cycle	8
cre01200	Carbon metabolism	8
cre00195	Photosynthesis	4
cre00630	Glyoxylate and dicarboxylate metabolism	3
cre00190	Oxidative phosphorylation	3

Expression

Expression pattern

Entrez Gene ID^*

106450752

111215158

106396106

103841917

103862864

819137

825246

107941756

107954570

121210881

102622121

100818028

100805786

100781676

100248004

100262551

7453964

18105204

11424367

11423341

101245299

101251315

101265735

102588555

102591899

102603108

107797391

107785488

4340025

4335330

103646666

103640190

100279513

123088174

123051323

123165497

123429329

123411953

8085774

8072707

8068395

100841910

100837200

5727287

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	3	1	3	2	2	2	3	3	1	2	3	3	2	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106450752 (bna-r.1 coexpression data)

Top 50 enrichment test to 106450752 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**