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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106450891   histone deacetylase complex subunit SAP18-like 
 bna-r.1   106390306   histone deacetylase complex subunit SAP18 
 bra-r.6   103866911   histone deacetylase complex subunit SAP18 
 ath-u.5   SAP18   SIN3 associated polypeptide P18 
 ghi-r.1   107957286   histone deacetylase complex subunit SAP18 
 ghi-r.1   107910889   histone deacetylase complex subunit SAP18 
 cit-r.1   102613422   histone deacetylase complex subunit SAP18 
 gma-u.5   100526922   uncharacterized LOC100526922 
 vvi-u.5   100250532   histone deacetylase complex subunit-like 
 ppo-u.5   7465827   histone deacetylase complex subunit SAP18 
 ppo-u.5   7461733   histone deacetylase complex subunit SAP18 
 mtr-u.5   25500995   histone deacetylase complex subunit SAP18 
 sly-u.5   101260232   histone deacetylase complex subunit SAP18 
 sot-r.1   102583352   histone deacetylase complex subunit SAP18 
 sot-r.1   107061776   auxin response factor 3-like 
 nta-r.1   107818098   histone deacetylase complex subunit SAP18 
 nta-r.1   107783806   histone deacetylase complex subunit SAP18 
 nta-r.1   107761194   histone deacetylase complex subunit SAP18-like 
 osa-u.5   4328127   histone deacetylase complex subunit SAP18 
 zma-u.5   100381502   histone deacetylase complex subunit SAP18 
 zma-u.5   100194333   histone deacetylase complex subunit SAP18 
 tae-r.2   123135857   histone deacetylase complex subunit SAP18 
 tae-r.2   123131883   histone deacetylase complex subunit SAP18 
 tae-r.2   123143377   histone deacetylase complex subunit SAP18 
 hvu-r.1   123402611   histone deacetylase complex subunit SAP18 
 sbi-r.1   8055038   histone deacetylase complex subunit SAP18 
 bdi-r.1   100828108   histone deacetylase complex subunit SAP18 
 cre-r.1   CHLRE_09g404400v5   uncharacterized protein 

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Top 50 coexpressed genes to 106450891 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106450891 (bna-r.1 coexpression data)

CoexMap"106450891"


bnaLOC106450891 | Entrez gene ID : 106450891    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 1 1 2 1 1 2 3 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03013 [list] [network] Nucleocytoplasmic transport (328 genes)
bna03015 [list] [network] mRNA surveillance pathway (420 genes)
GO BP
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (225 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0008134 [list] [network] transcription factor binding  (62 genes)  IEA  
GO:0003714 [list] [network] transcription corepressor activity  (90 genes)  IEA  
Protein XP_013748136.1 [sequence] [blastp]
XP_013748137.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 2,  cyto 2,  cyto_mito 2,  mito_plas 2  (predict for XP_013748136.1)
mito 4,  chlo 2,  cyto 2,  cyto_mito 2,  mito_plas 2  (predict for XP_013748137.1)
Subcellular
localization
TargetP
mito 6,  chlo 3  (predict for XP_013748136.1)
mito 6,  chlo 3  (predict for XP_013748137.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106450891
bna-r.1
for
106390306
bra-r.6
for
103866911
ath-u.5
for
SAP18
ghi-r.1
for
107957286
ghi-r.1
for
107910889
cit-r.1
for
102613422
gma-u.5
for
100526922
vvi-u.5
for
100250532
ppo-u.5
for
7465827
ppo-u.5
for
7461733
mtr-u.5
for
25500995
sly-u.5
for
101260232
sot-r.1
for
102583352
sot-r.1
for
107061776
nta-r.1
for
107818098
nta-r.1
for
107783806
nta-r.1
for
107761194
osa-u.5
for
4328127
zma-u.5
for
100381502
zma-u.5
for
100194333
tae-r.2
for
123135857
tae-r.2
for
123131883
tae-r.2
for
123143377
hvu-r.1
for
123402611
sbi-r.1
for
8055038
bdi-r.1
for
100828108
cre-r.1
for
CHLRE_09g404400v5


Ortholog ID: 7188
Species bna bna bra ath ghi ghi cit gma vvi ppo ppo mtr sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC106450891 LOC106390306 LOC103866911 SAP18 LOC107957286 LOC107910889 LOC102613422 LOC100526922 LOC100250532 LOC7465827 LOC7461733 LOC25500995 LOC101260232 LOC102583352 LOC107061776 LOC107818098 LOC107761194 LOC107826252 LOC4328127 LOC100381502 LOC100194333 LOC123135857 LOC123131883 LOC123143377 LOC123402611 LOC8055038 LOC100828108 CHLRE_09g404400v5
Function* histone deacetylase complex subunit SAP18-like histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 SIN3 associated polypeptide P18 histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 uncharacterized LOC100526922 histone deacetylase complex subunit-like histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 auxin response factor 3-like histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18-like histone deacetylase complex subunit SAP18-like histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 histone deacetylase complex subunit SAP18 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 6
bna04120 Ubiquitin mediated proteolysis 3
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 6
bna04120 Ubiquitin mediated proteolysis 3
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 9
bra03050 Proteasome 5
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03020 RNA polymerase 3
ath03420 Nucleotide excision repair 3
ath03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03040 Spliceosome 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03040 Spliceosome 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 4
cit04136 Autophagy - other 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
vvi03040 Spliceosome 3
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo03018 RNA degradation 2
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03050 Proteasome 3
mtr03420 Nucleotide excision repair 2
mtr00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
sly03040 Spliceosome 5
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03010 Ribosome 3
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 4
nta03010 Ribosome 3
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03010 Ribosome 5
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03013 Nucleocytoplasmic transport 3
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03013 Nucleocytoplasmic transport 3
zma03015 mRNA surveillance pathway 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae04626 Plant-pathogen interaction 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae04120 Ubiquitin mediated proteolysis 2
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi03040 Spliceosome 2
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106450891 106390306 103866911 819172 107957286 107910889 102613422 100526922 100250532 7465827 7461733 25500995 101260232 102583352 107061776 107818098 107761194 107826252 4328127 100381502 100194333 123135857 123131883 123143377 123402611 8055038 100828108 5720765
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