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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106452512   splicing factor 3B subunit 3 
 ath-u.5   AT3G11960   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 gma-u.5   100799711   splicing factor 3B subunit 3 
 gma-u.5   100806799   splicing factor 3B subunit 3 
 vvi-u.5   100252096   pre-mRNA-splicing factor prp12 
 ppo-u.5   7455620   uncharacterized LOC7455620 
 mtr-u.5   25499564   splicing factor 3B subunit 3 
 sly-u.5   101261183   uncharacterized LOC101261183 
 osa-u.5   4342674   uncharacterized LOC4342674 
 zma-u.5   103632101   splicing factor 3B subunit 3 

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Top 50 coexpressed genes to 106452512 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106452512 (bna-r.1 coexpression data)

CoexMap"106452512"


bnaLOC106452512 | Entrez gene ID : 106452512    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005686 [list] [network] U2 snRNP  (88 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0030620 [list] [network] U2 snRNA binding  (25 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_048615199.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto_nucl 4,  E.R. 1  (predict for XP_048615199.1)
Subcellular
localization
TargetP
chlo 8,  other 3  (predict for XP_048615199.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106452512

.
ath-u.5
for
AT3G11960

.
gma-u.5
for
100799711

.
gma-u.5
for
100806799

.
vvi-u.5
for
100252096

.
ppo-u.5
for
7455620

.
mtr-u.5
for
25499564

.
sly-u.5
for
101261183

.
osa-u.5
for
4342674

.
zma-u.5
for
103632101

.


Ortholog ID: 8453
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT3G11960 LOC100806799 LOC100799711 LOC101261183 LOC4342674 LOC103632101 LOC103870295 LOC103859423 LOC100252096 LOC7455620 LOC25499564 LOC123188638 LOC123052774 LOC123426147 LOC107891227 LOC107889475 LOC106452512 LOC106401173 LOC8063686 LOC102600929 LOC102624787 LOC100839023 LOC107784860 LOC107775427
Function* Cleavage and polyadenylation specificity factor (CPSF) A subunit protein splicing factor 3B subunit 3 splicing factor 3B subunit 3 uncharacterized LOC101261183 uncharacterized LOC4342674 splicing factor 3B subunit 3 splicing factor 3B subunit 3 spliceosome-associated protein 130 A pre-mRNA-splicing factor prp12 uncharacterized LOC7455620 splicing factor 3B subunit 3 splicing factor 3B subunit 3 splicing factor 3B subunit 3 DNA damage-binding protein 1 splicing factor 3B subunit 3 splicing factor 3B subunit 3 splicing factor 3B subunit 3 spliceosome-associated protein 130 A-like splicing factor 3B subunit 3 pre-mRNA-splicing factor prp12 uncharacterized LOC102624787 splicing factor 3B subunit 3 uncharacterized LOC107784860 uncharacterized LOC107775427
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 8
gma03040 Spliceosome 3
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03040 Spliceosome 2
gma03082 ATP-dependent chromatin remodeling 2
gma04712 Circadian rhythm - plant 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03082 ATP-dependent chromatin remodeling 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03082 ATP-dependent chromatin remodeling 2
bra03440 Homologous recombination 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 3
bra04120 Ubiquitin mediated proteolysis 2
bra04136 Autophagy - other 2
bra04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo04144 Endocytosis 2
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03082 ATP-dependent chromatin remodeling 2
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04712 Circadian rhythm - plant 2
bna04136 Autophagy - other 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04712 Circadian rhythm - plant 2
bna04142 Lysosome 2
bna00760 Nicotinate and nicotinamide metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
nta03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820369 100806799 100799711 101261183 4342674 103632101 103870295 103859423 100252096 7455620 25499564 123188638 123052774 123426147 107891227 107889475 106452512 106401173 8063686 102600929 102624787 100839023 107784860 107775427
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