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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PGAZAT   polygalacturonase ADPG2-like protein 
 ath-u.5   QRT2   Pectin lyase-like superfamily protein 
 vvi-u.5   100263423   probable polygalacturonase At1g80170 
 vvi-u.5   100855221   polygalacturonase 
 vvi-u.5   100243033   polygalacturonase 
 ppo-u.5   7478117   probable polygalacturonase At1g80170 
 ppo-u.5   7473629   polygalacturonase 
 mtr-u.5   11444474   polygalacturonase 
 sly-u.5   XOPG1   polygalacturonase 
 sly-u.5   PG2   polygalacturonase-2a 
 osa-u.5   4339483   probable polygalacturonase At1g80170 
 zma-u.5   103644217   polygalacturonase 
 zma-u.5   103644218   polygalacturonase ADPG1 

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Top 50 coexpressed genes to PGAZAT (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PGAZAT (ath-u.5 coexpression data)

CoexMap"106452859"


bnaLOC106452859 | Entrez gene ID : 106452859    
Species ath vvi ppo mtr sly osa zma hvu bna cit bra ghi sbi bdi nta gma tae cre sot
Paralog 2 3 2 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00040 [list] [network] Pentose and glucuronate interconversions (366 genes)
GO BP
GO:0009901 [list] [network] anther dehiscence  (11 genes)  IEA  
GO:0010047 [list] [network] fruit dehiscence  (11 genes)  IEA  
GO:0045490 [list] [network] pectin catabolic process  (11 genes)  IEA  
GO CC
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (211 genes)  IEA  
Protein XP_013750495.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  chlo 2,  extr 2,  cyto_nucl 2  (predict for XP_013750495.1)
Subcellular
localization
TargetP
scret 3  (predict for XP_013750495.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
PGAZAT
ath-u.5
for
QRT2
vvi-u.5
for
100263423
vvi-u.5
for
100855221
vvi-u.5
for
100243033
ppo-u.5
for
7478117
ppo-u.5
for
7473629
mtr-u.5
for
11444474
sly-u.5
for
XOPG1
sly-u.5
for
PG2
osa-u.5
for
4339483
zma-u.5
for
103644217
zma-u.5
for
103644218


Ortholog ID: 458
Species ath ghi cit vvi ppo mtr sly sly sot sot nta nta osa zma zma bdi
Symbol QRT2 LOC107950651 PG LOC100243033 LOC7478117 LOC11433078 PG2 LOC101264436 LOC102594305 LOC102585179 LOC107824130 LOC107779855 LOC4339483 LOC103644217 LOC103644218 LOC100829282
Function* Pectin lyase-like superfamily protein polygalacturonase QRT2 polygalacturonase polygalacturonase probable polygalacturonase At1g80170 probable polygalacturonase At1g80170 polygalacturonase-2a probable polygalacturonase At1g80170 probable polygalacturonase At1g80170 probable polygalacturonase At1g80170 polygalacturonase-2-like probable polygalacturonase At1g80170 probable polygalacturonase At1g80170 polygalacturonase polygalacturonase ADPG1 uncharacterized LOC100829282
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath02010 ABC transporters 4
ath04981 Folate transport and metabolism 4
ath00561 Glycerolipid metabolism 2
ath00564 Glycerophospholipid metabolism 2
ath00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 4
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00941 Flavonoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00360 Phenylalanine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00904 Diterpenoid biosynthesis 3
sot00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 3
nta00562 Inositol phosphate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00531 Glycosaminoglycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819988 107950651 102578026 100243033 7478117 11433078 544051 101264436 102594305 102585179 107824130 107779855 4339483 103644217 103644218 100829282
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